View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9851_low_2 (Length: 359)
Name: NF9851_low_2
Description: NF9851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9851_low_2 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 171 - 359
Target Start/End: Original strand, 3854900 - 3855081
Alignment:
| Q |
171 |
gttgttgttaatatgataaagttaacaaaccttatgaattacaatactttgaagagaggggcaggcgcggatgaacttcttcaaccaatcccaacgataa |
270 |
Q |
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| T |
3854900 |
gttgttgctaatatgataaagttaacaaaccttatgaattacaatactttgaagagaggggcaggcgcggatgaacttcttcaaccaatcccaac----- |
3854994 |
T |
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| Q |
271 |
tgataataatattcctcatcctcttttctcaaagctaagctccacacgagttaaattgaaaaactgagttgtctgtactggcgtgacat |
359 |
Q |
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| T |
3854995 |
-gacaataatattcctcatcctc-tttctcaaagctaagctccacatgagttaaattgaaaaactgagttgtctgtactggcgcgacat |
3855081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 14 - 92
Target Start/End: Original strand, 3854755 - 3854833
Alignment:
| Q |
14 |
caaaggcattgcagttgggaacaaattgtggatgcaatgaattatgatcatcaacgcttaatccatagcctcctcctcc |
92 |
Q |
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| T |
3854755 |
caaagacattgcagttggggacaaattgtggatgcaatgaattatgatcatcaacgcttgatccatagcctcctcctcc |
3854833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 93; Significance: 3e-45; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 179 - 339
Target Start/End: Complemental strand, 4141730 - 4141580
Alignment:
| Q |
179 |
taatatgataaagttaacaaaccttatgaattacaatactttgaagagaggggcaggcgcggatgaacttcttcaaccaatcccaacgataatgataata |
278 |
Q |
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| T |
4141730 |
taatatgatagagttaacaaaccttatgaatcacaatactttgaagagaggggcaggcgcggatgaatttcttcaaccaatccca---------atgata |
4141640 |
T |
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| Q |
279 |
atattcctcatcctcttttctcaaagctaagctccacacgagttaaattgaaaaactgagt |
339 |
Q |
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| T |
4141639 |
atattcctcatcctc-cttctcaaagctaagctccatatgagttaaattgaaaaactgagt |
4141580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 14 - 97
Target Start/End: Complemental strand, 4141902 - 4141819
Alignment:
| Q |
14 |
caaaggcattgcagttgggaacaaattgtggatgcaatgaattatgatcatcaacgcttaatccatagcctcctcctcctccga |
97 |
Q |
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| T |
4141902 |
caaaggcattgcagttggggacaaattgtggatgcaatgaattatgatcatcgccgcttaatccataacctactcctcctccga |
4141819 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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