View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9851_low_3 (Length: 338)
Name: NF9851_low_3
Description: NF9851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9851_low_3 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 298; Significance: 1e-167; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 18 - 323
Target Start/End: Complemental strand, 7036697 - 7036392
Alignment:
| Q |
18 |
gaaaagattcagcagagtccaatggctcaacctcgtatatatcatcaatttttccagcaagtacttgtttatctctagtagttatgatgattctacttcc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7036697 |
gaaaagattcagcagagtccaatggctcaacctcgtatatatcatcaaattttccagcaagtacttgtttatctctagtagttatgatgattctacttcc |
7036598 |
T |
|
| Q |
118 |
tggtcctaaccaatcaactattccaatcaaaacttctagttgctctgcatctttaacatcatcaagaacaataagaaccttcatgcggcttagccttttc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7036597 |
tggtcctaaccaatcaactattccaatcaaaacttctagttgctctgcatctttaacatcatcaagaacaataagaaccttcatgcggcttagccttttc |
7036498 |
T |
|
| Q |
218 |
ttaaccaaaggaggtaatccatttatcatgtcatctttcaaatcttcttcctctaatagagtggataaaagattttttcttagcctcaaactgtttgttc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7036497 |
ttaaccaaaggaggtaatccatttatcatgtcatctttcaaatcttcttcctctaatagagtggataaaagattttttcttagcctcaaactgtttgttc |
7036398 |
T |
|
| Q |
318 |
cacatc |
323 |
Q |
| |
|
||||| |
|
|
| T |
7036397 |
tacatc |
7036392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 18 - 334
Target Start/End: Original strand, 7075265 - 7075581
Alignment:
| Q |
18 |
gaaaagattcagcagagtccaatggctcaacctcgtatatatcatcaatttttccagcaagtacttgtttatctctagtagttatgatgattctacttcc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||| || ||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
7075265 |
gaaaagattcagcagagtccaatggctcaacttcatatatatcatcaacttttccagaaagtacttgtttatctctagcagttatgatgattctacttcc |
7075364 |
T |
|
| Q |
118 |
tggtcctaaccaatcaactattccaatcaaaacttctagttgctctgcatctttaacatcatcaagaacaataagaaccttcatgcggcttagccttttc |
217 |
Q |
| |
|
||||||||||||||||||| |||||| ||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
7075365 |
tggtcctaaccaatcaactgttccaaccaaaacttctagttgttccgcatctttgacatcatcaagaacaataagaaccttcatgcggctaagccttttc |
7075464 |
T |
|
| Q |
218 |
ttaaccaaaggaggtaatccatttatcatgtcatctttcaaatcttcttcctctaatagagtggataaaagattttttcttagcctcaaactgtttgttc |
317 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||| | |
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|
| T |
7075465 |
ttaaccaaaggtggtaatccatttatcatgtcatctttcaaatcttcatcctctaatagagtggataaaagcttttttcttaacctcaaactgtttgtgc |
7075564 |
T |
|
| Q |
318 |
cacatctctctgcttct |
334 |
Q |
| |
|
|| |||| |||| |||| |
|
|
| T |
7075565 |
catatctttctgattct |
7075581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 18 - 334
Target Start/End: Complemental strand, 7030988 - 7030672
Alignment:
| Q |
18 |
gaaaagattcagcagagtccaatggctcaacctcgtatatatcatcaatttttccagcaagtacttgtttatctctagtagttatgatgattctacttcc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
7030988 |
gaaaagattcagcagagtccaatggctcaacctcgtatatatcatcaacttttccagcaagtacttgcttatctctagtagttatgatgattctacttct |
7030889 |
T |
|
| Q |
118 |
tggtcctaaccaatcaactattccaatcaaaacttctagttgctctgcatctttaacatcatcaagaacaataagaaccttcatgcggcttagccttttc |
217 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||| ||| ||||||||| |
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|
| T |
7030888 |
tggtcctaaccaatcaactgttccaatcaaaacttctagttgctctgcatctttgatatcgtcaagaacaataagaaccttcatacggtgaagccttttc |
7030789 |
T |
|
| Q |
218 |
ttaaccaaaggaggtaatccatttatcatgtcatctttcaaatcttcttcctctaatagagtggataaaagattttttcttagcctcaaactgtttgttc |
317 |
Q |
| |
|
||||||||||||||||| |||||||||| ||||||||||||| |||||||| |||||| |||||||||| | ||||||||| ||||||||||||||||| |
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|
| T |
7030788 |
ttaaccaaaggaggtaacccatttatcagttcatctttcaaattttcttcctttaatagggtggataaaataatttttcttaacctcaaactgtttgttc |
7030689 |
T |
|
| Q |
318 |
cacatctctctgcttct |
334 |
Q |
| |
|
||||||| |||| |||| |
|
|
| T |
7030688 |
cacatctttctgattct |
7030672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 23 - 299
Target Start/End: Complemental strand, 7023594 - 7023318
Alignment:
| Q |
23 |
gattcagcagagtccaatggctcaacctcgtatatatcatcaatttttccagcaagtacttgtttatctctagtagttatgatgattctacttcctggtc |
122 |
Q |
| |
|
|||||| ||||||||||||| | ||||| |||| |||||| |||||||| ||||||||| || ||| |||||||| ||||||| ||||||||||| |
|
|
| T |
7023594 |
gattcaacagagtccaatggttgaaccttgtatgtatcatttgtttttccaacaagtacttccgtaactcccgtagttattatgattcgacttcctggtc |
7023495 |
T |
|
| Q |
123 |
ctaaccaatcaactattccaatcaaaacttctagttgctctgcatctttaacatcatcaagaacaataagaaccttcatgcggcttagccttttcttaac |
222 |
Q |
| |
|
| |||||||||| | |||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
7023494 |
caaaccaatcaagtgttccaaccaaaacttctaattgctctgcatctttgacatcatcaagaacaataagaaccttcatgcggcgaagccttttattaaa |
7023395 |
T |
|
| Q |
223 |
caaaggaggtaatccatttatcatgtcatctttcaaatcttcttcctctaatagagtggataaaagattttttctta |
299 |
Q |
| |
|
||||| ||||| ||||||||| ||||||||| || |||||||||||| |||||||||||||| |||||||||| |
|
|
| T |
7023394 |
taaaggttgtaattcatttatcagatcatctttcgtattttcttcctctaacagagtggataaaagcttttttctta |
7023318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 80 - 201
Target Start/End: Original strand, 7092768 - 7092889
Alignment:
| Q |
80 |
acttgtttatctctagtagttatgatgattctacttcctggtcctaaccaatcaactattccaatcaaaacttctagttgctctgcatctttaacatcat |
179 |
Q |
| |
|
|||||||||||| |||| ||||| ||||||||||| ||| |||||||||||||| | ||||||| ||| ||||| ||| || ||| || ||||| | |
|
|
| T |
7092768 |
acttgtttatctttagttgttataatgattctactatctgttcctaaccaatcaagtgttccaattaaagtttctacttgtcgtgaatcattgacatcgt |
7092867 |
T |
|
| Q |
180 |
caagaacaataagaaccttcat |
201 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
7092868 |
caagaacaataagaaccttcat |
7092889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 74 - 201
Target Start/End: Original strand, 7081376 - 7081503
Alignment:
| Q |
74 |
gcaagtacttgtttatctctagtagttatgatgattctacttcctggtcctaaccaatcaactattccaatcaaaacttctagttgctctgcatctttaa |
173 |
Q |
| |
|
|||| |||||| |||||| |||| |||| ||||||||||| |||| ||| |||||||||| | ||||||| |||| ||||| ||| | || ||| || | |
|
|
| T |
7081376 |
gcaactacttgcttatctttagttgttacaatgattctactacctgttccaaaccaatcaagtgttccaattaaaatttctaattgttgtggatccttga |
7081475 |
T |
|
| Q |
174 |
catcatcaagaacaataagaaccttcat |
201 |
Q |
| |
|
|||| |||||||||| |||||||||||| |
|
|
| T |
7081476 |
catcgtcaagaacaacaagaaccttcat |
7081503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 75 - 201
Target Start/End: Original strand, 7068822 - 7068948
Alignment:
| Q |
75 |
caagtacttgtttatctctagtagttatgatgattctacttcctggtcctaaccaatcaactattccaatcaaaacttctagttgctctgcatctttaac |
174 |
Q |
| |
|
|||||||||| |||||| || ||||||||||||||||| ||| ||| |||||||||| | ||||||| |||| |||||||||||| ||| | || |
|
|
| T |
7068822 |
caagtacttgcttatctacggttgttatgatgattctactaccttttccaaaccaatcaagtgttccaattaaaatatctagttgctcttgatcactcac |
7068921 |
T |
|
| Q |
175 |
atcatcaagaacaataagaaccttcat |
201 |
Q |
| |
|
||| |||||||||| |||||||||||| |
|
|
| T |
7068922 |
atcgtcaagaacaacaagaaccttcat |
7068948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 206
Target Start/End: Original strand, 4002217 - 4002253
Alignment:
| Q |
170 |
ttaacatcatcaagaacaataagaaccttcatgcggc |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |
|
|
| T |
4002217 |
ttaacatcatcaagaacaataagaaccttcatacggc |
4002253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 170 - 201
Target Start/End: Original strand, 4009914 - 4009945
Alignment:
| Q |
170 |
ttaacatcatcaagaacaataagaaccttcat |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
4009914 |
ttaacatcatcaagaacaataagaaccttcat |
4009945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 207
Target Start/End: Original strand, 3817517 - 3817551
Alignment:
| Q |
173 |
acatcatcaagaacaataagaaccttcatgcggct |
207 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |
|
|
| T |
3817517 |
acatcatcaagaacgataagaaccttcatgcggct |
3817551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 207
Target Start/End: Complemental strand, 3919947 - 3919913
Alignment:
| Q |
173 |
acatcatcaagaacaataagaaccttcatgcggct |
207 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |
|
|
| T |
3919947 |
acatcatcaagaacgataagaaccttcatgcggct |
3919913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 206
Target Start/End: Complemental strand, 3954611 - 3954577
Alignment:
| Q |
172 |
aacatcatcaagaacaataagaaccttcatgcggc |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| |
|
|
| T |
3954611 |
aacatcatcaagaacaataagaaccttcatacggc |
3954577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 206
Target Start/End: Complemental strand, 3933171 - 3933138
Alignment:
| Q |
173 |
acatcatcaagaacaataagaaccttcatgcggc |
206 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| |
|
|
| T |
3933171 |
acatcatcaagaacaataagaactttcatgcggc |
3933138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 201
Target Start/End: Original strand, 13397869 - 13397899
Alignment:
| Q |
171 |
taacatcatcaagaacaataagaaccttcat |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
13397869 |
taacatcatcaagaacaataagaaccttcat |
13397899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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