View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9851_low_5 (Length: 319)
Name: NF9851_low_5
Description: NF9851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9851_low_5 |
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| [»] chr8 (5 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 68 - 319
Target Start/End: Original strand, 7035932 - 7036170
Alignment:
| Q |
68 |
tcaatattttgggccgttcatcatttaagcccactaggacctcatcattaggatttgtcccatattgcatcctttcaggataaataataaataatctgta |
167 |
Q |
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| T |
7035932 |
tcaatattttgggccgttcatcatttaagcccactaggac-------------tttgtcccatattgcatcctttcaggataaataataaataatctgta |
7036018 |
T |
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| Q |
168 |
ttgaaaaattcttcaattttacattcaaagtaaggtattgttaaaataaataaaacgtggttgaaatttacacattttctctcttctttgttgtacagga |
267 |
Q |
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| T |
7036019 |
ttgaaaaattcttcaattttacattcaaagtaaggtattgttaaaataaataaaacgtggttgaaatttacacattttctctcttctttgttgtacaggg |
7036118 |
T |
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| Q |
268 |
atgatgctaagcttgtagaagaaatagttcaaaatgtgttgacgaagttaaa |
319 |
Q |
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| T |
7036119 |
atgatgctaagcttgtagaagaaatagttcaaaatgtgttgacgaagttaaa |
7036170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 202 - 309
Target Start/End: Original strand, 7030344 - 7030451
Alignment:
| Q |
202 |
gtattgttaaaataaataaaacgtggttgaaatttacacattttctctcttctttgttgtacaggaatgatgctaagcttgtagaagaaatagttcaaaa |
301 |
Q |
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| T |
7030344 |
gtattgttaaaataaataaaatttgattgaaatttacacattttctctttactttattgtacagggatgatgctaagcttgttgaagaaatagttcaaaa |
7030443 |
T |
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| Q |
302 |
tgtgttga |
309 |
Q |
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| T |
7030444 |
tgtgttga |
7030451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 182 - 316
Target Start/End: Complemental strand, 7075926 - 7075795
Alignment:
| Q |
182 |
aattttacattcaaagtaaggtattgttaaaataaataaaacgtggttgaaatttacacattttctctcttctttgttgtacaggaatgatgctaagctt |
281 |
Q |
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| T |
7075926 |
aattttacattcaaagtaaggt---gttaaaataaatataatttgattgaagcttatacattttatcttttctttgttgtacagggatgatgctaagctt |
7075830 |
T |
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| Q |
282 |
gtagaagaaatagttcaaaatgtgttgacgaagtt |
316 |
Q |
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| T |
7075829 |
gttgaagaaatacttcaaagtgtgttgatgaagtt |
7075795 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 182 - 316
Target Start/End: Original strand, 7022937 - 7023072
Alignment:
| Q |
182 |
aattttacattcaaagtaaggtattgttaaaataaataa-aacgtggttgaaatttacacattttctctcttctttgttgtacaggaatgatgctaagct |
280 |
Q |
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| T |
7022937 |
aattttacattcaaaggatggtattgtttaaataaatatgaatttgattgaagcttatacattttctcttttctttgttgtgcagggatgatgctaagct |
7023036 |
T |
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| Q |
281 |
tgtagaagaaatagttcaaaatgtgttgacgaagtt |
316 |
Q |
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| T |
7023037 |
tgtagaaaaaacagttgaaagtgtgttgatgaagtt |
7023072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 7035859 - 7035909
Alignment:
| Q |
1 |
taaatataccaggttgatcaaaagttgtgtataggaatctatctctctctc |
51 |
Q |
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| T |
7035859 |
taaatataccaggttggtcaaaagttgtgaataagaatctctctctctctc |
7035909 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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