View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9851_low_6 (Length: 314)
Name: NF9851_low_6
Description: NF9851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9851_low_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 6 - 291
Target Start/End: Original strand, 3598397 - 3598682
Alignment:
| Q |
6 |
tgcaatgaattctattcccccctacaaagtgtaaattaatcaaataaaaagcacgtaattatcagcaattattctgcattgagtaatgttaatagattaa |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3598397 |
tgcaatgaattctattcccccctacaaagtgtaaattaatcaaataaaaagcatgtaattatcagcaattattctgcattgagtaatgttaatagattaa |
3598496 |
T |
|
| Q |
106 |
gacttactctaaatcttctagcgtcgcatccatagccttgctgannnnnnnnnnnnnnnncagtttccgtgacagtgtctttctcaacataaccagtaac |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3598497 |
gacttactctaaatcttctagcgtcgcatccatagccttgctgatttttttcatttttttcagtttccgtgacagtgtctttctcaacataaccagtaac |
3598596 |
T |
|
| Q |
206 |
atctaaaaatatgaattttttccaagtatatgtgagaaatgaactaacaactcatgaaaataatctattcaaaagagaagagtaac |
291 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
3598597 |
atctaaaaatatgaattttttccaagtatatgtgagaaatgaactaacaactcatgaaaataaactattcaaaagagaagagtaac |
3598682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 134; Significance: 9e-70; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 6 - 293
Target Start/End: Complemental strand, 4356627 - 4356335
Alignment:
| Q |
6 |
tgcaatgaattctattcccccctacaaagtgtaaattaatcaaataaaaag----cacgtaattatcagcaattattctgcattgagtaatgttaataga |
101 |
Q |
| |
|
||||||||||||||||||||| ||| ||||| ||||||||||||| ||||| ||| ||||||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
4356627 |
tgcaatgaattctattccccc-tacgaagtgcaaattaatcaaattaaaagttagcacataattatcaacaattgttctgcattgagtaatgttaataga |
4356529 |
T |
|
| Q |
102 |
ttaagacttactctaaatcttctagcgtcgcatccatagccttgctgannnnnnnnnnnnnnnncagtttccgtgacagtgtctttctcaacataaccag |
201 |
Q |
| |
|
||||||||| ||||||||||||||||||| || || |||||||||||| |||||||| ||||||||||||||||||||| |||| |
|
|
| T |
4356528 |
ttaagacttgctctaaatcttctagcgtcacaaccgtagccttgctgatttttccattttttttcagtttccttgacagtgtctttctcaacatgaccaa |
4356429 |
T |
|
| Q |
202 |
taacatctaaaaatatgaatt--ttttccaagtatatgtgagaaatgaactaacaactcatgaaaataatctattcaaaagagaagagtaacta |
293 |
Q |
| |
|
|||||||| ||||||||| || |||||||||||||| ||||||||||||||||||||| ||||||||| | |||||||||||||||||||||| |
|
|
| T |
4356428 |
taacatcttaaaatatgatttcattttccaagtatatatgagaaatgaactaacaactcctgaaaataaacaattcaaaagagaagagtaacta |
4356335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 175 - 293
Target Start/End: Original strand, 45221399 - 45221519
Alignment:
| Q |
175 |
tgacagtgtctttctcaacataaccagtaacatctaaaaatatgaatt--ttttccaagtatatgtgagaaatgaactaacaactcatgaaaataatcta |
272 |
Q |
| |
|
||||||||||||||||||||| |||| |||||||||||||||||| || |||||||||||||| ||||||||||||||| ||||||||||||||| | | |
|
|
| T |
45221399 |
tgacagtgtctttctcaacatgaccaataacatctaaaaatatgatttcattttccaagtatatatgagaaatgaactaaaaactcatgaaaataaacaa |
45221498 |
T |
|
| Q |
273 |
ttcaaaagagaagagtaacta |
293 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
45221499 |
ttcaaaagagaagagtaacta |
45221519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University