View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9851_low_9 (Length: 251)
Name: NF9851_low_9
Description: NF9851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9851_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 3598292 - 3598099
Alignment:
| Q |
1 |
ttagtcttaaaacttttatgtcaactatagtgtttttatataaaattcatcatatgttgatttcaacctctgaattatcattaactcgattcgagatgtg |
100 |
Q |
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| T |
3598292 |
ttagtcttaaaacttttatgtcaactatagtgtttttatataaaattcatcatatgttgatttcaacctctgaagtatcattaacttgattcgagatgtg |
3598193 |
T |
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| Q |
101 |
actatttttagtagtgaaattgagattcacatttctactactttgtctgttatttcttatatttctttctttatttccaccatatttcatgctt |
194 |
Q |
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| T |
3598192 |
actatttttagtagtgaaattgagattcacgtttctactactttgtctgttatttcttatatttctttctttatttcctctatatttcatgctt |
3598099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 4356733 - 4356973
Alignment:
| Q |
1 |
ttagtcttaaaacttttatgtcaactatagtgtttttatataaaattcatcatatgttgatttcaacctctgaattatcattaactcgattcgagat--g |
98 |
Q |
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| T |
4356733 |
ttagtatttaaatttttatgtcaactatagtgtttttctataatattcatcatatattgatctcaacctttgaagtatcaggaacttgagttgagatacg |
4356832 |
T |
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| Q |
99 |
tgactatttttagtagtgaaattgagattcacatttctactactttgtctgttatttcttatatttctttctttatttccaccatatttcatgcttatga |
198 |
Q |
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| T |
4356833 |
tgactatttttgttagcgaaattgagattcacgtttctactactttgtctgttatttcttatatttctttctttatttcctc--tatttcatgcttatga |
4356930 |
T |
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| Q |
199 |
ttgtgtgtcaatataattttgttgaataatgtattagcctttg |
241 |
Q |
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| T |
4356931 |
ctatgtataaatatatttttgttgaataatgtattagcctttg |
4356973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 239
Target Start/End: Original strand, 24455633 - 24455738
Alignment:
| Q |
132 |
tttctactactttgtctgttatttcttatatttctttctttatttccaccatatttcatgcttatgattgtgtgtcaatataattttgttgaataatgta |
231 |
Q |
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|||||||||||| || |||||||| | |||||||| ||| |||||| | |||||||||||| |||||| || ||| || ||||||||||| ||| | |
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| T |
24455633 |
tttctactacttcgttagttatttcatctatttcttgcttcatttcctc--tatttcatgcttctgattgagtatcatcctatttttgttgaattatgca |
24455730 |
T |
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| Q |
232 |
ttagcctt |
239 |
Q |
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| T |
24455731 |
ttagcctt |
24455738 |
T |
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