View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9852_high_10 (Length: 431)
Name: NF9852_high_10
Description: NF9852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9852_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 280; Significance: 1e-156; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 1 - 399
Target Start/End: Original strand, 6400705 - 6401111
Alignment:
| Q |
1 |
tatcagtattgcatacatgtgactgggatcaaacatatatggcatatgctnnnnnnnngattagaaggtgagccatgaaacgaaaaaatcctagaccttt |
100 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
6400705 |
tatcagtattgcatacatgtgactgggatcatacatatatggcatatgctaaaaacaagattagaaggtgagccatgaaacgaaaaaatcctagaccttt |
6400804 |
T |
|
| Q |
101 |
caactacacatgcatgcacnnnnnnnnn------ccttctttagttagacaacaattcaaga---taaaatactaactaactaaacatgcactacatgtc |
191 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |
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| T |
6400805 |
caactacacatgcatgcacaaaaaaaaaaaaaaaccttctttagttagacaacaattcaagaagataaaatacgaactaactaaacatgcactacatgtc |
6400904 |
T |
|
| Q |
192 |
atgtattcataagttcaacataatcttctttgattaccaagggcgcacgttctgtaagttatataaatataagactgactaagatttaaagagaagttgt |
291 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
6400905 |
atgtattcataagttcaacataatcttctttgattaccaagggcgcacgttccgtt-gttatataaatataagactgactaatatttaaagagaagttgt |
6401003 |
T |
|
| Q |
292 |
atatggatatacaatcgacatattctgttatgataaaaggaaaaaagttacaaatttcacagagaaataaacctacataactatcagctatcaaacttcg |
391 |
Q |
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|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
6401004 |
atatggatatacaatcgacatattctgttatgacaaaaggaaaaaagttacaaatttcacagagaaataaacctacataactatcagttatcaaacttcg |
6401103 |
T |
|
| Q |
392 |
ggtgattt |
399 |
Q |
| |
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||| |||| |
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| T |
6401104 |
ggtaattt |
6401111 |
T |
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