View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9852_high_11 (Length: 427)
Name: NF9852_high_11
Description: NF9852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9852_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 46 - 419
Target Start/End: Original strand, 41989834 - 41990208
Alignment:
| Q |
46 |
atcaaccacacccatatctatcaatcgacaagcgctaattctctcaacaaatttattacatcttctattacacgcaactacacctccattctttttcacg |
145 |
Q |
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| T |
41989834 |
atcaaccacacccatatctatcaatcgacacgcgctaattctttcaacaaatttattacatcttctattacacgcaactacacctccattctttttcacg |
41989933 |
T |
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| Q |
146 |
agaacctgcaatatcattgaaatcccctaccaacaatcaatcatgttactaataaaacttaggactttataatcacaatgttttattgataatcttgaaa |
245 |
Q |
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| T |
41989934 |
agaacctgcaatatcattgaaatcccctaccaacaaccaatcatgttactaataaaacttaggactttataatcacaatgttttattgataatcttgaaa |
41990033 |
T |
|
| Q |
246 |
atcgaaccgagaccgccacttgttg-aataacattaattttcatattaaaattaagactccacatttcttctaatattgcacgatcttgatattctttgt |
344 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41990034 |
atcgaaccgagaccgccacttgttgaaataacattaattttcatattaaaattaagactccacatttcttctaatattgcacgatcttgatattctttgt |
41990133 |
T |
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| Q |
345 |
tggagaaagtaacgaaataataatcattgctcagatcaacaatgttgatttctccatttctcacccgcctttgct |
419 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
41990134 |
tggagaaagtaacaaaataataatcattgctcagatcaacaatgttgatttctccatttctcacccacatttgct |
41990208 |
T |
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