View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9852_high_12 (Length: 427)
Name: NF9852_high_12
Description: NF9852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9852_high_12 |
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Alignment Details
Target: chr6 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 15 - 317
Target Start/End: Original strand, 4433714 - 4434016
Alignment:
| Q |
15 |
caaaggaggaacacttgttgacaccttcaagggtaacaacagcagtgagaatgaagacaaaaggcaacaaaaaagcaaggatgaggatagtatgaaaaag |
114 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4433714 |
caaaagaggaacacttgttgacaccttcaagggtaacaacagcagtgagaatgaagacaaaaggcaacaaaaaagcaaggatgaggatagtatgaaaaag |
4433813 |
T |
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| Q |
115 |
ggttctataagaaatgtgacaagctgcgaccttgatcttcatcaagtcaataaacccattgttgcttgatatcgtgatgcttctcatgctaggcgagaac |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4433814 |
ggttctataagaaatgtgacaagctgcgaccttgatcttcatcaagtcaataaacccattgttgcttgatatcgtgatgcttctcatgctaggcgagaac |
4433913 |
T |
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| Q |
215 |
tgaagctgcatcgtcgtttatgatgccaaaaagcaccactatgtcattgccaccgacaataaccttaaacgacaataacaacactttactactatttctt |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4433914 |
tgaagctgcatcgtcgtttatgatgccaaaaagcaccactatgtcattgccaccgacaataaccttaaacgacaataacaacactttactactatttctt |
4434013 |
T |
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| Q |
315 |
ctt |
317 |
Q |
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||| |
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| T |
4434014 |
ctt |
4434016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 112; Significance: 2e-56; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 15 - 174
Target Start/End: Original strand, 3613068 - 3613227
Alignment:
| Q |
15 |
caaaggaggaacacttgttgacaccttcaagggtaacaacagcagtgagaatgaagacaaaaggcaacaaaaaagcaaggatgaggatagtatgaaaaag |
114 |
Q |
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|||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||||||| | ||| || || ||||||||||| |
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| T |
3613068 |
caaaggaggagcacttgttgacaccttcaagggtaacaagagcagtgagaatgaaaacaaaaggtaacaaaaaagctaagataagaatggtatgaaaaag |
3613167 |
T |
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| Q |
115 |
ggttctataagaaatgtgacaagctgcgaccttgatcttcatcaagtcaataaacccatt |
174 |
Q |
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||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
3613168 |
ggttcgataggaaatgtgacgagctgcgaccttgatcttcatcaagtcaataaacccatt |
3613227 |
T |
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