View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9852_high_13 (Length: 404)

Name: NF9852_high_13
Description: NF9852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9852_high_13
NF9852_high_13
[»] chr2 (6 HSPs)
chr2 (1-387)||(10528612-10528997)
chr2 (1-205)||(10535486-10535684)
chr2 (198-386)||(10535866-10536053)
chr2 (326-355)||(15890670-15890699)
chr2 (219-300)||(33146085-33146166)
chr2 (225-301)||(14335656-14335732)
[»] chr3 (2 HSPs)
chr3 (1-201)||(34370372-34370564)
chr3 (220-300)||(27394304-27394384)
[»] chr6 (3 HSPs)
chr6 (1-77)||(24467529-24467605)
chr6 (1-74)||(24471829-24471902)
chr6 (219-355)||(21802547-21802683)
[»] scaffold0361 (1 HSPs)
scaffold0361 (225-355)||(17097-17227)
[»] chr5 (4 HSPs)
chr5 (219-355)||(14594065-14594201)
chr5 (225-300)||(141567-141642)
chr5 (225-355)||(1406184-1406314)
chr5 (262-366)||(15175857-15175962)
[»] scaffold0068 (1 HSPs)
scaffold0068 (219-355)||(59256-59392)
[»] chr8 (1 HSPs)
chr8 (225-300)||(17564721-17564796)
[»] chr7 (5 HSPs)
chr7 (225-300)||(3391808-3391883)
chr7 (219-300)||(16425952-16426033)
chr7 (259-300)||(20261564-20261605)
chr7 (247-300)||(33576662-33576715)
chr7 (219-300)||(42813073-42813154)
[»] chr1 (2 HSPs)
chr1 (226-300)||(36604777-36604851)
chr1 (227-300)||(16536422-16536495)
[»] scaffold0003 (2 HSPs)
scaffold0003 (219-300)||(14665-14746)
scaffold0003 (219-300)||(28811-28892)
[»] chr4 (2 HSPs)
chr4 (276-353)||(6233786-6233863)
chr4 (326-358)||(38051613-38051645)


Alignment Details
Target: chr2 (Bit Score: 367; Significance: 0; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 1 - 387
Target Start/End: Original strand, 10528612 - 10528997
Alignment:
Q  1 aaagccatgattcaagctcaaagggaagatggaaacaaaaaagtgaaatcgcaagagggaaagagaaacaaataccatagtaagacaagcgagttttgtg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||    
T  10528612 aaagccatgattcaagctcaaagggaagatggaaacaaaaaagtgaaatcgcaagagggagagagaaacaaatactatagtaagacaagcgagttttgtg 10528711  T
Q  101 aatgagttcttcttctaacatcaccatgcatgtaccacccatcatcataatttcttcttcctcttcttcttcgtcatcgcaagacaatggtgtattgatt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  10528712 aatgagttcttcttctaacatcaccatgcatgtaccacccatcatcataatttcttcttcttcttcttcttcgtcatcgcaagacaatggtgtattgatt 10528811  T
Q  201 aaagtagattaaagcagaggggtcgtaattcaagcattccataggagaggagcgtaaaaaatttacttttcaaccgaggggagtgtatatttttacataa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10528812 aaagtagattaaagcagaggggtcgtaattcaagcattccataggagaggagcgtaaaaaatttacttttcaaccgaggggagtgtatatttttacataa 10528911  T
Q  301 agagtgatgtgattgtaatttcaacttctcttaggggaggagagtgtaatttactttatattatatgaacgcatgtttctcataact 387  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10528912 agagtgatgtgattgtaatttcaacttctctta-gggaggagagtgtaatttactttatattatatgaacgcatgtttctcataact 10528997  T

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Target: chr2; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 10535486 - 10535684
Alignment:
Q  1 aaagccatgattcaagctcaaagggaagatggaaacaaaaaagtgaaatcgcaagagggaaagagaaacaaataccatagtaagacaagcgagttttgtg 100  Q
    |||||||||||||||||||||||||||| |||||||||||||||||| | |||||||||| | | |||||||||||| ||||||||||||||| ||||||    
T  10535486 aaagccatgattcaagctcaaagggaaggtggaaacaaaaaagtgaagtagcaagagggagataaaaacaaataccagagtaagacaagcgagatttgtg 10535585  T
Q  101 aatgagttcttcttctaacatcaccatgcatgtaccacccatcatcataatttcttcttcctcttcttcttcgtcatcgcaagacaatggtgtattgatt 200  Q
    |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||      ||||||||||  |||| ||||||||||||||||||||||    
T  10535586 aatgagttcttcttctgacatcaccatgcatgcaccacccatcatcataatttct------tcttcttctttatcattgcaagacaatggtgtattgatt 10535679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 198 - 386
Target Start/End: Original strand, 10535866 - 10536053
Alignment:
Q  198 attaaagtagattaaagcagaggggtcgtaattcaagcattccataggagaggagcgtaaaaaatttacttttcaaccgaggggagtgtatatttttaca 297  Q
    |||||||||||||||||   | |||||||||||||||||||||||||| |||  || |||| | ||||||||||||  || ||||||||||||||| |||    
T  10535866 attaaagtagattaaagtgtaagggtcgtaattcaagcattccataggggagaggcataaatattttacttttcaa-ggaagggagtgtatattttaaca 10535964  T
Q  298 taaagagtgatgtgattgtaatttcaacttctcttaggggaggagagtgtaatttactttatattatatgaacgcatgtttctcataac 386  Q
     |    | ||||||| ||  | |  ||||| ||||| | ||| || |||||||||||| ||| ||||||||||| ||||||||||||||    
T  10535965 catgaggggatgtgagtgcgactcaaacttttcttaagagagtagggtgtaatttactctattttatatgaacgtatgtttctcataac 10536053  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 326 - 355
Target Start/End: Complemental strand, 15890699 - 15890670
Alignment:
Q  326 ttctcttaggggaggagagtgtaatttact 355  Q
    ||||||||||||||||||||||||||||||    
T  15890699 ttctcttaggggaggagagtgtaatttact 15890670  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 300
Target Start/End: Complemental strand, 33146166 - 33146085
Alignment:
Q  219 ggggtcgtaattcaagcattccataggagaggagcgtaaaaaatttacttttcaaccgaggggagtgtatatttttacataa 300  Q
    ||||| |||||||||||||   ||||| |||| | ||| ||| ||| ||||||||  |||||||||||||||||| ||||||    
T  33146166 ggggttgtaattcaagcatcttataggggaggggggtataaattttccttttcaagggaggggagtgtatattttaacataa 33146085  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 225 - 301
Target Start/End: Original strand, 14335656 - 14335732
Alignment:
Q  225 gtaattcaagcattccataggagaggagcgtaaaaaatttacttttcaaccgaggggagtgtatatttttacataaa 301  Q
    ||||||||||||||  |||||||| ||| ||| ||| ||||||||||||   | | ||||||||||||| |||||||    
T  14335656 gtaattcaagcatttaataggagatgagagtataaattttacttttcaaggaatgagagtgtatattttaacataaa 14335732  T

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Target: chr3 (Bit Score: 93; Significance: 4e-45; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 34370564 - 34370372
Alignment:
Q  1 aaagccatgattcaagctcaaagggaagatggaaacaaaaaa-gtgaaatcgcaagagggaaagagaaacaaataccatagtaagacaagcgagttttgt 99  Q
    ||||||||  |||||||||||||||||||||||||||||||| ||||| | |||||||||| ||| |||||||||||| || |||||||||||| |||||    
T  34370564 aaagccatatttcaagctcaaagggaagatggaaacaaaaaaagtgaagtagcaagagggagagaaaaacaaataccagagcaagacaagcgagatttgt 34370465  T
Q  100 gaatgagttcttcttctaacatcaccatgcatgtaccacccatcatcataatttcttcttcctcttcttcttcgtcatcgcaagacaatggtgtattgat 199  Q
    ||||||||||||||||| |||||||| | |||| | ||||||||||||||| ||||        ||||||||| |||||| |||||||||||||||||||    
T  34370464 gaatgagttcttcttctgacatcaccgtacatgcagcacccatcatcataa-ttct--------ttcttcttcttcatcggaagacaatggtgtattgat 34370374  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 300
Target Start/End: Complemental strand, 27394384 - 27394304
Alignment:
Q  220 gggtcgtaattcaagcattccataggagaggagcgtaaaaaatttacttttcaaccgaggggagtgtatatttttacataa 300  Q
    |||| |||||||||||||   ||| |||||||| ||| ||| ||||||||| ||  ||||||| |||||||||| ||||||    
T  27394384 gggttgtaattcaagcatcttataagagaggagagtataaattttactttttaagggaggggaatgtatattttaacataa 27394304  T

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Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 24467605 - 24467529
Alignment:
Q  1 aaagccatgattcaagctcaaagggaagatggaaacaaaaaagtgaaatcgcaagagggaaagagaaacaaatacca 77  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||| ||| ||||||||||||    
T  24467605 aaagccatgattcaagctcaaagggaagatggaaataaaaaagtgaagtagcaagagggagagaaaaacaaatacca 24467529  T

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Target: chr6; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 24471902 - 24471829
Alignment:
Q  1 aaagccatgattcaagctcaaagggaagatggaaacaaaaaagtgaaatcgcaagagggaaagagaaacaaata 74  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |  ||||||||| ||| |||||||||    
T  24471902 aaagccatgattcaagctcaaagggaagatggaaacaaaaaagtgaagtaacaagagggagagaaaaacaaata 24471829  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 355
Target Start/End: Original strand, 21802547 - 21802683
Alignment:
Q  219 ggggtcgtaattcaagcattccataggagaggagcgtaaaaaatttacttttcaaccgaggggagtgtatatttttacataaagagtgatgtgattgtaa 318  Q
    ||||| |||||||||||||   ||||  |||| | ||| ||| ||||||||||||  |||||||||||||||||| ||||||   | || | || |||||    
T  21802547 ggggttgtaattcaagcatcttatagaggaggggagtataaattttacttttcaagggaggggagtgtatattttaacataagaggggaggagagtgtaa 21802646  T
Q  319 tttcaacttctcttaggggaggagagtgtaatttact 355  Q
    ||  | | ||| |||| ||||||||||||||||||||    
T  21802647 ttcaagcatcttttagaggaggagagtgtaatttact 21802683  T

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Target: scaffold0361 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 225 - 355
Target Start/End: Original strand, 17097 - 17227
Alignment:
Q  225 gtaattcaagcattccataggagaggagcgtaaaaaatttacttttcaaccgaggggagtgtatatttttacataaagagtgatgtgattgtaatttcaa 324  Q
    |||||||||||||   |||||||| ||| ||| ||| |||| |||| ||  |||||||||||||||||| ||||||   | ||||||| |||||||  |     
T  17097 gtaattcaagcatcttataggagatgagagtataaattttattttttaagggaggggagtgtatattttaacataagaggggatgtgagtgtaattcaag 17196  T
Q  325 cttctcttaggggaggagagtgtaatttact 355  Q
    ||||||||||  |||| ||||||||||||||    
T  17197 cttctcttagaagaggggagtgtaatttact 17227  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 219 - 355
Target Start/End: Complemental strand, 14594201 - 14594065
Alignment:
Q  219 ggggtcgtaattcaagcattccataggagaggagcgtaaaaaatttacttttcaaccgaggggagtgtatatttttacataaagagtgatgtgattgtaa 318  Q
    ||||| |||||||||||||   ||| | |||| | ||| ||| ||||||||||||  ||||| |||||||||||| ||||||   | ||  |||||||||    
T  14594201 ggggttgtaattcaagcatcttataagggaggggagtataaattttacttttcaagggagggaagtgtatattttaacataagaggggagatgattgtaa 14594102  T
Q  319 tttcaacttctcttaggggaggagagtgtaatttact 355  Q
    ||  ||| ||| | |||||||||||||||||||||||    
T  14594101 ttcaaacatctttgaggggaggagagtgtaatttact 14594065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 225 - 300
Target Start/End: Original strand, 141567 - 141642
Alignment:
Q  225 gtaattcaagcattccataggagaggagcgtaaaaaatttacttttcaaccgaggggagtgtatatttttacataa 300  Q
    |||||||||||||  |||||| |||| | ||| ||| ||||||||||||  ||||||| |||||||||| ||||||    
T  141567 gtaattcaagcatctcataggggaggggagtataaattttacttttcaaaggaggggattgtatattttaacataa 141642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 225 - 355
Target Start/End: Original strand, 1406184 - 1406314
Alignment:
Q  225 gtaattcaagcattccataggagaggagcgtaaaaaatttacttttcaaccgaggggagtgtatatttttacataaagagtgatgtgattgtaatttcaa 324  Q
    |||||||||||||   ||||| |||| | ||| ||| |||| |||||||  |||| ||||||||||||| ||||||   | |||| || |||||||  |     
T  1406184 gtaattcaagcatcttataggcgaggggagtataaattttatttttcaatggaggagagtgtatattttaacataagaggagatgagagtgtaattcaag 1406283  T
Q  325 cttctcttaggggaggagagtgtaatttact 355  Q
    |||||||||| | ||| ||||||||||||||    
T  1406284 cttctcttagagaaggggagtgtaatttact 1406314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 366
Target Start/End: Original strand, 15175857 - 15175962
Alignment:
Q  262 tttacttttcaaccgaggggagtgtatatttttacataaagagtgatgtgattgtaatttcaacttctcttaggggaggagagtgtaatttact-ttata 360  Q
    ||||||||||||  ||| |  ||||||||||| ||||||  || || | || |||||||  | | |||||||||||||| |||||||||||||| |||||    
T  15175857 tttacttttcaagagagagatgtgtatattttaacataagaagggaggggagtgtaattcaagcatctcttaggggaggggagtgtaatttactcttata 15175956  T
Q  361 ttatat 366  Q
    ||||||    
T  15175957 ttatat 15175962  T

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Target: scaffold0068 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 355
Target Start/End: Complemental strand, 59392 - 59256
Alignment:
Q  219 ggggtcgtaattcaagcattccataggagaggagcgtaaaaaatttacttttcaaccgaggggagtgtatatttttacataaagagtgatgtgattgtaa 318  Q
    ||||| |||||||||||||   ||||  |||| | ||| ||| ||||||||||||  |||||||||||||||||| ||||||   | || | || |||||    
T  59392 ggggttgtaattcaagcatcttatagaggaggggagtataaattttacttttcaagggaggggagtgtatattttaacataagaggggaggagagtgtaa 59293  T
Q  319 tttcaacttctcttaggggaggagagtgtaatttact 355  Q
    ||  | | ||| |||| ||||||||||||||||||||    
T  59292 ttcaagcatcttttagaggaggagagtgtaatttact 59256  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 225 - 300
Target Start/End: Complemental strand, 17564796 - 17564721
Alignment:
Q  225 gtaattcaagcattccataggagaggagcgtaaaaaatttacttttcaaccgaggggagtgtatatttttacataa 300  Q
    |||||||||||||   ||||| |||| | ||| ||| ||||||||||||  |||||||||||||||||| ||||||    
T  17564796 gtaattcaagcatcttataggggaggggagtataaattttacttttcaagggaggggagtgtatattttaacataa 17564721  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 225 - 300
Target Start/End: Complemental strand, 3391883 - 3391808
Alignment:
Q  225 gtaattcaagcattccataggagaggagcgtaaaaaatttacttttcaaccgaggggagtgtatatttttacataa 300  Q
    |||||||||||||  |||||| |||| | ||| ||| ||||||||| ||  |||||||||||||||||| ||||||    
T  3391883 gtaattcaagcatctcataggggaggggagtataaattttactttttaagggaggggagtgtatattttaacataa 3391808  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 300
Target Start/End: Original strand, 16425952 - 16426033
Alignment:
Q  219 ggggtcgtaattcaagcattccataggagaggagcgtaaaaaatttacttttcaaccgaggggagtgtatatttttacataa 300  Q
    ||||| ||| |||||||||  |||||| |||| | ||| |||  |||||||||||  |||||||||||||||||| ||||||    
T  16425952 ggggttgtatttcaagcatctcataggggaggggagtataaatattacttttcaagggaggggagtgtatattttaacataa 16426033  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 300
Target Start/End: Original strand, 20261564 - 20261605
Alignment:
Q  259 aaatttacttttcaaccgaggggagtgtatatttttacataa 300  Q
    |||||||||||||||  |||||||||||||||||| ||||||    
T  20261564 aaatttacttttcaagggaggggagtgtatattttaacataa 20261605  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 300
Target Start/End: Original strand, 33576662 - 33576715
Alignment:
Q  247 gaggagcgtaaaaaatttacttttcaaccgaggggagtgtatatttttacataa 300  Q
    |||||| ||| ||| ||||||||||||  |||||||||||||||||| ||||||    
T  33576662 gaggagagtataaattttacttttcaaaagaggggagtgtatattttaacataa 33576715  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 300
Target Start/End: Complemental strand, 42813154 - 42813073
Alignment:
Q  219 ggggtcgtaattcaagcattccataggagaggagcgtaaaaaatttacttttcaaccgaggggagtgtatatttttacataa 300  Q
    ||||| |||||||||||||   ||||| |||| | ||| ||| ||||||||||||| |||| | ||||||||||| ||||||    
T  42813154 ggggttgtaattcaagcatcttataggggaggggagtataaattttacttttcaacggaggagtgtgtatattttaacataa 42813073  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 226 - 300
Target Start/End: Complemental strand, 36604851 - 36604777
Alignment:
Q  226 taattcaagcattccataggagaggagcgtaaaaaatttacttttcaaccgaggggagtgtatatttttacataa 300  Q
    ||||||||||||   ||||| |||||| ||| ||| ||||||||||||  ||||| |||||||||||| ||||||    
T  36604851 taattcaagcatcttataggggaggagagtataaattttacttttcaaaggagggaagtgtatattttaacataa 36604777  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 300
Target Start/End: Complemental strand, 16536495 - 16536422
Alignment:
Q  227 aattcaagcattccataggagaggagcgtaaaaaatttacttttcaaccgaggggagtgtatatttttacataa 300  Q
    |||||||||||  |||| | |||| | |||  |||||||||||||||  |||||||||||||||||| ||||||    
T  16536495 aattcaagcatctcataagggaggggagtatcaaatttacttttcaagggaggggagtgtatattttaacataa 16536422  T

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Target: scaffold0003 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 300
Target Start/End: Original strand, 14665 - 14746
Alignment:
Q  219 ggggtcgtaattcaagcattccataggagaggagcgtaaaaaatttacttttcaaccgaggggagtgtatatttttacataa 300  Q
    ||||| ||| |||||||||  |||||| |||| | ||| |||  |||||||||||  |||||||||||||||||| ||||||    
T  14665 ggggttgtatttcaagcatctcataggggaggggagtataaatattacttttcaagggaggggagtgtatattttaacataa 14746  T

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Target: scaffold0003; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 300
Target Start/End: Original strand, 28811 - 28892
Alignment:
Q  219 ggggtcgtaattcaagcattccataggagaggagcgtaaaaaatttacttttcaaccgaggggagtgtatatttttacataa 300  Q
    ||||| ||| |||||||||  |||||| |||| | ||| |||  |||||||||||  |||||||||||||||||| ||||||    
T  28811 ggggttgtatttcaagcatctcataggggaggggagtataaatattacttttcaagggaggggagtgtatattttaacataa 28892  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 353
Target Start/End: Original strand, 6233786 - 6233863
Alignment:
Q  276 gaggggagtgtatatttttacataaagagtgatgtgattgtaatttcaacttctcttaggggaggagagtgtaattta 353  Q
    |||||||||||||||||| ||||| | ||  ||| || |||||||  ||| ||| | |||||||||||||||||||||    
T  6233786 gaggggagtgtatattttaacatagaaaggaatgggagtgtaattcaaacatctttgaggggaggagagtgtaattta 6233863  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 326 - 358
Target Start/End: Original strand, 38051613 - 38051645
Alignment:
Q  326 ttctcttaggggaggagagtgtaatttacttta 358  Q
    |||||||||||||||||||||||||||| ||||    
T  38051613 ttctcttaggggaggagagtgtaatttaattta 38051645  T

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