View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9852_high_17 (Length: 356)
Name: NF9852_high_17
Description: NF9852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9852_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 33151716 - 33151485
Alignment:
| Q |
1 |
caaactcccgtactcggccttcaaattcacgctcttttaatccaaactccttcactcgtccttgaaaatatttctctttggactccagctcctgcattcg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
33151716 |
caaactcccgtactcggccttcaaattcacgctcttttaatccaaactccttcactcgtccttgaaaatatttctctttggactccagttcctgcattcg |
33151617 |
T |
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| Q |
101 |
tccttcatattgcttctcttttgatccaagtcccttcagctggctttcaaaatgcttcttaaatgattcaagatccttcacttgacctttacattcctct |
200 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
33151616 |
tccttcatattgcttctcttttgatctaagtcccttcagctggctttc-aaatgcttcttaaatgattcaagatccttcacttgacctttaaattcctct |
33151518 |
T |
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| Q |
201 |
tcttttgatttaaactccgtaacccgaccttca |
233 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
33151517 |
tcttttgatttaaactccgtaacccgaccttca |
33151485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 335
Target Start/End: Complemental strand, 33151503 - 33151466
Alignment:
| Q |
298 |
ctccgtaacctgaccttcatattgcttcttagttgact |
335 |
Q |
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| T |
33151503 |
ctccgtaacccgaccttcatattgcttcttacttgact |
33151466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 16 - 175
Target Start/End: Complemental strand, 2361793 - 2361634
Alignment:
| Q |
16 |
ggccttcaaattcacgctcttttaatccaaactccttcactcgtccttgaaaatatttctctttggactccagctcctgcattcgtccttcatattgctt |
115 |
Q |
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| T |
2361793 |
ggccttcaaaatcacactctcttaatccaaacaccttcacccgtctttgaaaatgttcctcttttgacttcaactccttcatccgtctttcaaatatctt |
2361694 |
T |
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| Q |
116 |
ctcttttgatccaagtcccttcagctggctttcaaaatgcttcttaaatgattcaagatc |
175 |
Q |
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|||||||||| ||||||||||| |||||| ||||||||| ||| |||||||| ||||| |
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| T |
2361693 |
ctcttttgatttgagtcccttcagttggcttccaaaatgctccttgaatgattccagatc |
2361634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 117 - 189
Target Start/End: Original strand, 39415106 - 39415178
Alignment:
| Q |
117 |
tcttttgatccaagtcccttcagctggctttcaaaatgcttcttaaatgattcaagatccttcacttgacctt |
189 |
Q |
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||||||||| |||| ||||||| |||||||| ||||||||||| |||||| || ||||||||| |||||| |
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| T |
39415106 |
tcttttgattcaagctccttcagttggctttcgaaatgcttcttttctgattccagctccttcactcgacctt |
39415178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 270 - 327
Target Start/End: Complemental strand, 51574469 - 51574412
Alignment:
| Q |
270 |
ggtcacattgtttctctttggaatcaagctccgtaacctgaccttcatattgcttctt |
327 |
Q |
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|||||||||| ||||||||||||||||||||||||||| || ||||| |||||||||| |
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| T |
51574469 |
ggtcacattgcttctctttggaatcaagctccgtaacccgatcttcaaattgcttctt |
51574412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 112 - 243
Target Start/End: Complemental strand, 51574712 - 51574581
Alignment:
| Q |
112 |
gcttctcttttgatccaagtcccttcagctggctttcaaaatgcttcttaaatgattcaagatccttcacttgacctttacattcctcttcttttgattt |
211 |
Q |
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||||||||||| |||| || |||| | ||||||||||||||||||| | | |||||| |||||||||| ||||| | ||||| |||||||||| |
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| T |
51574712 |
gcttctcttttaatccgagctcctttaactggctttcaaaatgcttcctttttatttcaagtaccttcacttggactttaaagtcctcctcttttgattc |
51574613 |
T |
|
| Q |
212 |
aaactccgtaacccgaccttcaaattcctcct |
243 |
Q |
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||||||| | ||||||||||||||| |||||| |
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| T |
51574612 |
aaactccttcacccgaccttcaaatgcctcct |
51574581 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 160
Target Start/End: Complemental strand, 51575039 - 51574953
Alignment:
| Q |
74 |
ctctttggactccagctcctgcattcgtccttcatattgcttctcttttgatccaagtcccttcagctggctttcaaaatgcttctt |
160 |
Q |
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|||||| ||| ||| ||||| || ||||||||| |||| |||||||||||| ||| |||||| |||||||||||||||||||| |
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| T |
51575039 |
ctcttttgacgccatctccttcacccgtccttcaaattgtttctcttttgatttgagttccttcacttggctttcaaaatgcttctt |
51574953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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