View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9852_high_21 (Length: 287)
Name: NF9852_high_21
Description: NF9852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9852_high_21 |
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Alignment Details
Target: chr4 (Bit Score: 152; Significance: 2e-80; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 29 - 220
Target Start/End: Complemental strand, 28168598 - 28168412
Alignment:
| Q |
29 |
tgttaaaaatgtaataacttgtatatggaaggtcgtcttatgcagcttaaatcctccatgtcgtccattctgaattactttctttccttgtgcaaaataa |
128 |
Q |
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| T |
28168598 |
tgttagaaatgtaataacttgtatatggaaggtcgtcttatgtagcttaaatcctccatgtcgtccattccgaattactttctttccttgtgcaaaataa |
28168499 |
T |
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| Q |
129 |
tgttgattggtggtcatgaagacttgaaatcaatgatgcttactaagttaaaaggatataccaggccagcttatgttccagattgggatagt |
220 |
Q |
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| T |
28168498 |
tgttgattggtggtcatgaagacttgaaatcaacgatgcttactaagttaaaaggatata-----ccagcttatgttccagatcgggatagt |
28168412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 35 - 189
Target Start/End: Complemental strand, 28173305 - 28173151
Alignment:
| Q |
35 |
aaatgtaataacttgtatatggaaggtcgtcttatgcagcttaaatcctccatgtcgtccattctgaattactttctttccttgtgcaaaataatgttga |
134 |
Q |
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| T |
28173305 |
aaatgtaataacttgtatatggaaggtcgccttatgtagcttaaatcatccatgttgtccattccaaattactttctttctttttgtaaaataatgttcg |
28173206 |
T |
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| Q |
135 |
ttggtggtcatgaagacttgaaatcaatgatgcttactaagttaaaaggatatac |
189 |
Q |
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| T |
28173205 |
ttggtggtcgtgaagacttgaaatcaacgatgcttgctcagttaaaaagatatac |
28173151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 28168641 - 28168609
Alignment:
| Q |
1 |
agttgaatacaccatgtaaagacatccttgtta |
33 |
Q |
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| T |
28168641 |
agttgaatacaccatgtaaggacatccttgtta |
28168609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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