View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9852_high_23 (Length: 270)
Name: NF9852_high_23
Description: NF9852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9852_high_23 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 11 - 270
Target Start/End: Complemental strand, 28168889 - 28168630
Alignment:
| Q |
11 |
caaaggtgcatgaaacgttgatgaaattggaaagatatacaagagaattgaactcgtatattttgggaaacattaggaatcatcaaacgatattgaaaga |
110 |
Q |
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| T |
28168889 |
caaaggtgcatgaaacgttgatgaaattgaaaagatatacaagagaattgaactcgtatattttgggaaacattaggaatcatcaaacgatattgaaaga |
28168790 |
T |
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| Q |
111 |
attaataaagaaagagaataaaacaactcttcataagtgtatggcttctactgagatgaggatatacacgagaagataagagtggttgtcgacaagatag |
210 |
Q |
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| T |
28168789 |
gttaataaagaaagagaataaaacaactcttcataaatgtatggcttctactgagatgaggatatacacgagaagataagagtggttgtcgacaagatag |
28168690 |
T |
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| Q |
211 |
gagacatgatggatgaatttaagaagtttgaagaagctaggaaacgaaagttgaatacac |
270 |
Q |
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| T |
28168689 |
gagacatgatggatgaatttaagaagtttgaagaagctaggaaaagaaagttgaatacac |
28168630 |
T |
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