View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9852_high_24 (Length: 265)
Name: NF9852_high_24
Description: NF9852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9852_high_24 |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 20 - 254
Target Start/End: Original strand, 41812778 - 41813012
Alignment:
| Q |
20 |
atacatgcatgtgaggactgccccacaatttggtctgtgaactagattagtcacacctatggtaaatggagtattcaaacctcttttttagacagaacaa |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |
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| T |
41812778 |
atacatgcatgtgaggactgccccacaatttggtctgtgaactagattagtcacacctaaaggaaatggagtattcaaacctcttttttagacagaacaa |
41812877 |
T |
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| Q |
120 |
tattttaagagaggccattgtgtatgtggattggtgggtgttgttggttggcatgtttgggtttaggtgctgctgcagtttcagcggctgtggtggcttc |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
41812878 |
tattttaagagaggccattgtgtatgtggattggtgggtgttgttggttggcatgtttgggtttaggtgctactgcagtttcagcggctgtggtggcttc |
41812977 |
T |
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| Q |
220 |
cttttgctttccttttggtggtgagatctccctat |
254 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
41812978 |
cttttgctttccttttggtggtgagatctccctat |
41813012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 20 - 254
Target Start/End: Complemental strand, 7605625 - 7605391
Alignment:
| Q |
20 |
atacatgcatgtgaggactgccccacaatttggtctgtgaactagattagtcacacctatggtaaatggagtattcaaacctcttttttagacagaacaa |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| || |
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| T |
7605625 |
atacatgcatgtgaggactgccccacaatttggtctgtgaactagattagtcacacctataggaaatggagtattcaaacctcttttttagacagaataa |
7605526 |
T |
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| Q |
120 |
tattttaagagaggccattgtgtatgtggattggtgggtgttgttggttggcatgtttgggtttaggtgctgctgcagtttcagcggctgtggtggcttc |
219 |
Q |
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| T |
7605525 |
tattttaagagaggctattgtgtatgtggattggtgggtgttgttggttgacatgtttgggtttaggtgctgctgcagtttcagcggctgtggtggcttc |
7605426 |
T |
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| Q |
220 |
cttttgctttccttttggtggtgagatctccctat |
254 |
Q |
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| T |
7605425 |
cttttgctttccttttggtggtgagatctccctat |
7605391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 20 - 254
Target Start/End: Complemental strand, 31769179 - 31768954
Alignment:
| Q |
20 |
atacatgcatgtgaggactgccccacaatttggtctgtgaactagattagtcacacctatggtaaatggagtattcaaacctcttttttagacagaacaa |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |
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| T |
31769179 |
atacatgcatgtgaggactgccccacaatttggtctgtgaactagattagtcacacctataggaaatggagtattcaaacctcttttttagacagaacaa |
31769080 |
T |
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| Q |
120 |
tattttaagagaggccattgtgtatgtggattggtgggtgttgttggttggcatgtttgggtttaggtgctgctgcagtttcagcggctgtggtggcttc |
219 |
Q |
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| T |
31769079 |
tattttaagagaggccattgtgta---------gtgggtgttgttggttggcatgtttgggtttaggtgctgctgcagtttcagcggctgtggtggcttc |
31768989 |
T |
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| Q |
220 |
cttttgctttccttttggtggtgagatctccctat |
254 |
Q |
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|||||||||||||||||||||| |||||||||||| |
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| T |
31768988 |
cttttgctttccttttggtggtaagatctccctat |
31768954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 27 - 254
Target Start/End: Original strand, 14186725 - 14186922
Alignment:
| Q |
27 |
catgtgaggactgccccacaatttggtctgtgaactagattagtcacacctatggtaaatggagtattcaaacctcttttttagacagaacaatatttta |
126 |
Q |
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| T |
14186725 |
catgtgaggactgccccacaatttggtctgtgaact--------cacacctatagaaaatggagtattcaaacctcttttttagacagaacaatatttta |
14186816 |
T |
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| Q |
127 |
agagaggccattgtgtatgtggattggtgggtgttgttggttggcatgtttgggtttaggtgctgctgcagtttcagcggctgtggtggcttccttttgc |
226 |
Q |
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| T |
14186817 |
agagaggctattgtgtatgtggattggtgggtgttgttggttggcatgtttgggt----------------------cggctgtggtggcttccttttgc |
14186894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 114
Target Start/End: Complemental strand, 20902135 - 20902088
Alignment:
| Q |
66 |
ttagtcacacctatggtaaatggagtattcaaacctcttttttagacag |
114 |
Q |
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| T |
20902135 |
ttagtcacacctataggaaatggagtattcaaacc-attttttagacag |
20902088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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