View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9852_high_25 (Length: 250)
Name: NF9852_high_25
Description: NF9852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9852_high_25 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 231; Significance: 1e-127; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 16 - 250
Target Start/End: Complemental strand, 14735195 - 14734961
Alignment:
| Q |
16 |
gcaattgagtaaaaagcttgctctagaagccacttatgcaaacaagactagagaattaagtactgaggttggttcatcatttttgttttgcagagttgtg |
115 |
Q |
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| T |
14735195 |
gcaattgagtaaaaagcttgctctagaagccacttatgcaaacaagactagagaattaagtactgaggttggttcatcatttttgttttgcagagttgtg |
14735096 |
T |
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| Q |
116 |
tttaaattttatattgtatggttatcataagaaatatatcagaagattaacttatgcatttaatttttgttgctctagttgtccaagattgatacggctt |
215 |
Q |
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| T |
14735095 |
tttaaattttatattgtatggttatcataagaaatatatcagaagattaacttatgcatttaatttttgttgctctacttgtccaagattgatacggctt |
14734996 |
T |
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| Q |
216 |
tgagaagtctcaaaacaacggtcattgcacagtac |
250 |
Q |
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| T |
14734995 |
tgagaagtctcaaaacaacggtcattgcacagtac |
14734961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 16 - 248
Target Start/End: Complemental strand, 14742170 - 14741938
Alignment:
| Q |
16 |
gcaattgagtaaaaagcttgctctagaagccacttatgcaaacaagactagagaattaagtactgaggttggttcatcatttttgttttgcagagttgtg |
115 |
Q |
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| T |
14742170 |
gcaaatgagtaataagcttgctctagaagccacttatgcaaacaagactagagaattaagtactgaggttggttcatcatttttattttgcaaagttgtg |
14742071 |
T |
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| Q |
116 |
tttaaattttatattgtatggttatcataagaaatatatcagaagattaacttatgcatttaatttttgttgctctagttgtccaagattgatacggctt |
215 |
Q |
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| T |
14742070 |
ttcaaatttaatattgtatggttatcataagaaatatatcagaagattaacttatgcatttaatttttgttgcttcagctgtccaatgttgagacggctt |
14741971 |
T |
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| Q |
216 |
tgagaagtctcaaaacaacggtcattgcacagt |
248 |
Q |
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| T |
14741970 |
tgagaagtctcaaaacaacaatgattgcacagt |
14741938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 233
Target Start/End: Original strand, 14998388 - 14998584
Alignment:
| Q |
35 |
gctctagaagccacttatgcaaacaagactagagaattaagtactgaggttggttcatcatttttgttttgcagagttgtgtttaaatttta-tattgta |
133 |
Q |
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| T |
14998388 |
gctcaagaagcagcttatgccaatatgactagagaattaggcactgaggttagttcattattttt---tggcagagttgtgtttaaaatctaatgatgtg |
14998484 |
T |
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| Q |
134 |
tggttatcataagaaatatatcagaagattaacttatgcatttaatttttgttgctctagttgtccaagattgatacggctttgagaagtctcaaaacaa |
233 |
Q |
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| T |
14998485 |
tgttattcagaagaagtatttcagacggttaatttgcacgtttaacttttgttgttccagctgtctaagattgatatggctttgacaagtctcaaaacaa |
14998584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 18 - 234
Target Start/End: Original strand, 29467219 - 29467433
Alignment:
| Q |
18 |
aattgagtaaaaagcttgctctagaagccacttatgcaaacaagactagagaattaagtactgaggttggttcatcatttttgttttgcagagttgtgtt |
117 |
Q |
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|||||| ||||| |||||||| |||||| |||||||| || | |||||| |||||||| |||||||||||||||| |||| |||| ||||| |||||| |
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| T |
29467219 |
aattgaataaaaggcttgctcaagaagcaacttatgccaatatgactagggaattaagcactgaggttggttcattattt---tttttcagagctgtgtt |
29467315 |
T |
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| Q |
118 |
t-aaattttatattgtatggttatcataagaaatatatcagaagattaacttatgcatttaatttttgttgctctagttgtccaagattgatacggcttt |
216 |
Q |
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| T |
29467316 |
taaaatctaatgatgtatgttacttggaagaagtatttcagacggttaatttgtgcatttaacttttgttgttccagctgtctaaggttgatatggcttt |
29467415 |
T |
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| Q |
217 |
gagaagtctcaaaacaac |
234 |
Q |
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| T |
29467416 |
gagaagtctcaaaacaac |
29467433 |
T |
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