View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9852_high_31 (Length: 226)
Name: NF9852_high_31
Description: NF9852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9852_high_31 |
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Alignment Details
Target: chr1 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 24 - 211
Target Start/End: Complemental strand, 39395900 - 39395716
Alignment:
| Q |
24 |
caaattagattcaattcttctctaaagcaaccaacattttgaatctcaggttaacttgatgaagaagataaatgattatacgaatgaatagcgcggttga |
123 |
Q |
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| T |
39395900 |
caaattagattcaattcttctctaaagcaaccaacattttgaatctcaggttaacttgatgaagaagatacatgattatacgaatgaatagcgcggttga |
39395801 |
T |
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| Q |
124 |
caaagaagaaggaaataaaaccaacctggagagaagggaaacaagttcgttacggtgagcggagagggtaccttccactctgtctctg |
211 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39395800 |
caaa---gaaggaaataaaaccaacctggagagaagggaaacaagttcgttacggtgagcggagagggtaccttccactctgtctctg |
39395716 |
T |
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