View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9852_high_32 (Length: 214)

Name: NF9852_high_32
Description: NF9852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9852_high_32
NF9852_high_32
[»] chr2 (2 HSPs)
chr2 (1-199)||(14734740-14734938)
chr2 (50-113)||(42963108-42963171)
[»] chr5 (2 HSPs)
chr5 (31-116)||(33093355-33093440)
chr5 (62-108)||(28096326-28096372)
[»] chr3 (2 HSPs)
chr3 (31-116)||(1346661-1346746)
chr3 (31-94)||(50653525-50653588)
[»] chr1 (5 HSPs)
chr1 (31-82)||(6132872-6132923)
chr1 (31-93)||(42066926-42066988)
chr1 (31-93)||(58692-58752)
chr1 (51-116)||(44721228-44721293)
chr1 (31-68)||(48610206-48610243)
[»] chr4 (1 HSPs)
chr4 (32-116)||(51880545-51880629)
[»] chr8 (2 HSPs)
chr8 (31-114)||(35584995-35585078)
chr8 (31-116)||(33023957-33024042)
[»] chr7 (3 HSPs)
chr7 (31-114)||(32710978-32711059)
chr7 (31-116)||(22685446-22685531)
chr7 (40-72)||(29979928-29979960)


Alignment Details
Target: chr2 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 14734938 - 14734740
Alignment:
Q  1 ttattttcatttttgtggtctcatgttcacattttcttaaagatgataatttttatcacgttaggaaatgtgatattcaattctgtaatatgtctttatt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  14734938 ttattttcatttttgtggtctcatgttcacattttcttaaagatgataatttttattacgttaggaaatgtgatattcaattctgtaatatgtctttatt 14734839  T
Q  101 caattaaactgtatattctcaggttcgtcaaagaatcctattatgtccttacaatgtgannnnnnnnnngctattcccctcccctacccatgttgattg 199  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||          ||||||||||||||||||||||||||||||    
T  14734838 caattaaattgtatattctcaggttcgtcaaagaatcctattatgtccttacagtgtgatattttttttgctattcccctcccctacccatgttgattg 14734740  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 113
Target Start/End: Original strand, 42963108 - 42963171
Alignment:
Q  50 tttttatcacgttaggaaatgtgatattcaattctgtaatatgtctttattcaattaaactgta 113  Q
    ||||||| | ||||||||||||||||||||||||  |||||| | ||| |||||||||| ||||    
T  42963108 tttttattatgttaggaaatgtgatattcaattccctaatatatgttttttcaattaaaatgta 42963171  T

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Target: chr5 (Bit Score: 50; Significance: 8e-20; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 31 - 116
Target Start/End: Complemental strand, 33093440 - 33093355
Alignment:
Q  31 attttcttaaagatgataatttttatcacgttaggaaatgtgatattcaattctgtaatatgtctttattcaattaaactgtatat 116  Q
    |||||||| ||||||||| ||||||| ||||||||||||| ||||||||||||  ||||||||| || |||||||||| |||||||    
T  33093440 attttcttgaagatgatagtttttattacgttaggaaatgcgatattcaattccctaatatgtcatttttcaattaaaatgtatat 33093355  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 108
Target Start/End: Complemental strand, 28096372 - 28096326
Alignment:
Q  62 taggaaatgtgatattcaattctgtaatatgtctttattcaattaaa 108  Q
    ||||||||||||||||||||| ||||||||| | || ||||||||||    
T  28096372 taggaaatgtgatattcaattttgtaatatgacatttttcaattaaa 28096326  T

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Target: chr3 (Bit Score: 50; Significance: 8e-20; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 31 - 116
Target Start/End: Complemental strand, 1346746 - 1346661
Alignment:
Q  31 attttcttaaagatgataatttttatcacgttaggaaatgtgatattcaattctgtaatatgtctttattcaattaaactgtatat 116  Q
    |||||||||||||||||| ||||||| || ||| |||||||||||||||||||  ||||||||| || |||||||||| |||||||    
T  1346746 attttcttaaagatgatagtttttattacattatgaaatgtgatattcaattccctaatatgtcatttttcaattaaaatgtatat 1346661  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 94
Target Start/End: Complemental strand, 50653588 - 50653525
Alignment:
Q  31 attttcttaaagatgataatttttatcacgttaggaaatgtgatattcaattctgtaatatgtc 94  Q
    |||||||||||||| ||| ||||||| || |||| |||| |||||||||||||  |||||||||    
T  50653588 attttcttaaagattatagtttttattaccttagaaaatatgatattcaattccctaatatgtc 50653525  T

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Target: chr1 (Bit Score: 48; Significance: 1e-18; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 31 - 82
Target Start/End: Complemental strand, 6132923 - 6132872
Alignment:
Q  31 attttcttaaagatgataatttttatcacgttaggaaatgtgatattcaatt 82  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  6132923 attttcttaaagatgataatttttattacgttaggaaatgtgatattcaatt 6132872  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 31 - 93
Target Start/End: Original strand, 42066926 - 42066988
Alignment:
Q  31 attttcttaaagatgataatttttatcacgttaggaaatgtgatattcaattctgtaatatgt 93  Q
    |||||||| ||||||||| ||||||| ||||||| ||||||||||||||||||| ||||||||    
T  42066926 attttcttgaagatgatagtttttattacgttagaaaatgtgatattcaattctctaatatgt 42066988  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 93
Target Start/End: Original strand, 58692 - 58752
Alignment:
Q  31 attttcttaaagatgataatttttatcacgttaggaaatgtgatattcaattctgtaatatgt 93  Q
    |||||||| |||||||||  |||||| ||||||||||||||||||||||||||  ||||||||    
T  58692 attttcttgaagatgata--ttttattacgttaggaaatgtgatattcaattccctaatatgt 58752  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 51 - 116
Target Start/End: Complemental strand, 44721293 - 44721228
Alignment:
Q  51 ttttatcacgttaggaaatgtgatattcaattctgtaatatgtctttattcaattaaactgtatat 116  Q
    |||||| ||||||| |||| |||||||||||| | ||||||||| || ||| |||||| |||||||    
T  44721293 ttttattacgttagaaaatatgatattcaattttctaatatgtcatttttcgattaaaatgtatat 44721228  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 31 - 68
Target Start/End: Original strand, 48610206 - 48610243
Alignment:
Q  31 attttcttaaagatgataatttttatcacgttaggaaa 68  Q
    |||||||| ||||||||||||||||| |||||||||||    
T  48610206 attttcttgaagatgataatttttattacgttaggaaa 48610243  T

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Target: chr4 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 32 - 116
Target Start/End: Original strand, 51880545 - 51880629
Alignment:
Q  32 ttttcttaaagatgataatttttatcacgttaggaaatgtgatattcaattctgtaatatgtctttattcaattaaactgtatat 116  Q
    ||||||| || |||||| ||||||| |||||||||| ||||||||||||||   |||||||||||| |||||||||| |||||||    
T  51880545 ttttcttgaatatgatagtttttattacgttaggaagtgtgatattcaatttcctaatatgtcttttttcaattaaaatgtatat 51880629  T

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Target: chr8 (Bit Score: 44; Significance: 3e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 31 - 114
Target Start/End: Complemental strand, 35585078 - 35584995
Alignment:
Q  31 attttcttaaagatgataatttttatcacgttaggaaatgtgatattcaattctgtaatatgtctttattcaattaaactgtat 114  Q
    ||||||||  |||||||| ||||||| ||||| ||||||||||||||||||| | || ||||||||| |||||||||| |||||    
T  35585078 attttctttgagatgatagtttttattacgttgggaaatgtgatattcaattttttagtatgtcttttttcaattaaaatgtat 35584995  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 116
Target Start/End: Original strand, 33023957 - 33024042
Alignment:
Q  31 attttcttaaagatgataatttttatcacgttaggaaatgtgatattcaattctgtaatatgtctttattcaattaaactgtatat 116  Q
    |||||||| ||||||||| ||||||| ||||||| ||||||||||||||||||   ||||||||  | || ||||||| |||||||    
T  33023957 attttcttgaagatgatagtttttattacgttagaaaatgtgatattcaattcccgaatatgtcccttttaaattaaaatgtatat 33024042  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 31 - 114
Target Start/End: Original strand, 32710978 - 32711059
Alignment:
Q  31 attttcttaaagatgataatttttatcacgttaggaaatgtgatattcaattctgtaatatgtctttattcaattaaactgtat 114  Q
    |||||||| |||||||||  |||||| ||||||||||||||||||||||||||  |||||| |  || |||||||||| |||||    
T  32710978 attttcttgaagatgata--ttttattacgttaggaaatgtgatattcaattccataatatataatttttcaattaaaatgtat 32711059  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 116
Target Start/End: Complemental strand, 22685531 - 22685446
Alignment:
Q  31 attttcttaaagatgataatttttatcacgttaggaaatgtgatattcaattctgtaatatgtctttattcaattaaactgtatat 116  Q
    ||||| || ||||||||| || |||| ||||||  |||||||||||||||||   |||||||||||| ||||| |||| |||||||    
T  22685531 attttattgaagatgatagttattattacgttaaaaaatgtgatattcaattacctaatatgtcttttttcaactaaaatgtatat 22685446  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 72
Target Start/End: Complemental strand, 29979960 - 29979928
Alignment:
Q  40 aagatgataatttttatcacgttaggaaatgtg 72  Q
    ||||||||||||||||| |||||||||||||||    
T  29979960 aagatgataatttttattacgttaggaaatgtg 29979928  T

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