View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9852_high_8 (Length: 511)
Name: NF9852_high_8
Description: NF9852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9852_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 366
Target Start/End: Complemental strand, 37108506 - 37108141
Alignment:
| Q |
1 |
accaaaagcaagagttgcatcatacaaagtttgttggcctccaattaatggcgacgagtgctttgatgcagacatacttgcagcatttgatgcagctatc |
100 |
Q |
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| T |
37108506 |
accaaaagcaagagttgcatcatacaaagtttgttggcctccaattaatggcgacgagtgctttgatgcagacatacttgcagcatttgatgcagctatc |
37108407 |
T |
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| Q |
101 |
catgatggtgttgatgtcttgtctgtgtcacttggtggctctgcttctaaccttttcaatgatagtgttgctattggatctttccatgctgctaagaaag |
200 |
Q |
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| T |
37108406 |
catgatggtgttgatgtcttgtctgtgtcacttggtggctctgcttctaaccttttcaatgatagtgttgctattggatctttccatgctgctaagaaag |
37108307 |
T |
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| Q |
201 |
gtattgttgttgtttgctctgctggcaatgatggaccaaaggatgctactgcagaaaatcttgctccttggtatatcacagtcggtgccagtacaatgga |
300 |
Q |
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| T |
37108306 |
gtattgttgttgtttgctctgctggcaatagtggaccaaatgatgctactgcatcaaatctagctccttggtatatcacagttggtgccagcacaatgga |
37108207 |
T |
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| Q |
301 |
tagagagttcgctagttatgttcttctacgcaacggtttaagcttcaaggtttgtctccttttcta |
366 |
Q |
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| T |
37108206 |
tagagagttccctagttatgttgttcttggtaacaatttaaccttcaaggtttgtctctttttcta |
37108141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 5 - 117
Target Start/End: Original strand, 39188767 - 39188879
Alignment:
| Q |
5 |
aaagcaagagttgcatcatacaaagtttgttggcctccaattaatggcgacgagtgctttgatgcagacatacttgcagcatttgatgcagctatccatg |
104 |
Q |
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|||||||||||||| | |||||||| || ||||| |||||| ||||| ||| ||||||||||| || || | ||||| |||||| ||||| |||| |
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| T |
39188767 |
aaagcaagagttgctgcttacaaagtctgctggccaccaattgatggcagcgaatgctttgatgctgatatcatggcagcctttgatatggctattcatg |
39188866 |
T |
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| Q |
105 |
atggtgttgatgt |
117 |
Q |
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|||| |||||||| |
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| T |
39188867 |
atggggttgatgt |
39188879 |
T |
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