View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9852_low_1 (Length: 696)
Name: NF9852_low_1
Description: NF9852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9852_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 401; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 19 - 452
Target Start/End: Original strand, 23028726 - 23029163
Alignment:
| Q |
19 |
agaatacacatttcttcattgttattcgtttagtgattgtataggaaactctacagagaacgcacatgagttaattgagaaacacgttttcacacattta |
118 |
Q |
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| T |
23028726 |
agaatacacatttcttcattgttattcgtttagtgattgtataggaaactctacagagaacgcacatgagttaattgagaaacacgttttcacacattta |
23028825 |
T |
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| Q |
119 |
caaatatggatgatgaattggaaaagcagttacatacgtatggccataccaaaaggcagagtcaaatatagagtgagaaatattaggaaataacaaaata |
218 |
Q |
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| T |
23028826 |
caaatatggatgatgaattggaaaagcagttacatacgtatggccataccaaaaggcagagtcaaaaatagagtgagaaatattaggaaataacaaaata |
23028925 |
T |
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| Q |
219 |
aatgtgatttggtattggaaacaaaatgaatgatatttacaaagtccaaaaatgatatcaccgtccatgaattatggggcctcttaatttcattctttga |
318 |
Q |
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| T |
23028926 |
aatgtgatttggtattgggaacaaaatgaatgatatttacaaagtccaaaaatgttatcaccgtccatgaattatggggcctcttaatttcattctttga |
23029025 |
T |
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| Q |
319 |
taatgacattcatttggaaattgggattgagcaaccataggttaaatactccatcatctctaacccctccttcacaaaatctt----tctctcacacaca |
414 |
Q |
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| T |
23029026 |
taatgacattcatttggaaattgggattgagcaaccataggttaaatactccatcatctctaacccctccttcacaaaatctttctctctctctcacaca |
23029125 |
T |
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| Q |
415 |
ttattcaaatatacatcgatttataaacctttcctcca |
452 |
Q |
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| T |
23029126 |
ttattcaaatatacatcgatttataaacctctcctcca |
23029163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 527 - 687
Target Start/End: Original strand, 23029232 - 23029391
Alignment:
| Q |
527 |
gggtaaattctaatgttatatctcctagttttatttatgcaaccgtttcttttgaattagtaattttcgttccgtaatcattcatttcatgtgattttag |
626 |
Q |
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|||||||||||||||||||| || ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23029232 |
gggtaaattctaatgttatagctagtagttttatttatacaaccgtttcttttgatctagtaattttcgttccgtaatcattcatttcatgtgattttag |
23029331 |
T |
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| Q |
627 |
tgttagtttttgtcattttggcttctcaattctttgtttttctcaagaattgttcattcat |
687 |
Q |
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|||||||||||| |||||||||| ||||| ||||| |||||||||||||||||||||||| |
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| T |
23029332 |
ggttagtttttgtgattttggcttttcaatactttg-ttttctcaagaattgttcattcat |
23029391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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