View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9852_low_11 (Length: 461)
Name: NF9852_low_11
Description: NF9852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9852_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 414; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 6 - 441
Target Start/End: Complemental strand, 26348439 - 26348007
Alignment:
| Q |
6 |
agaagcagagagagtaattggaccacatgatgatgaaaacaatatttttggtgtaacgaattttgaacaacttaggaaattgcattatttacaagcagca |
105 |
Q |
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| T |
26348439 |
agaagcagaaagagtaattggaccacatgatga---aaacaatatttttggtgtaacgaattttgaacaacttaggaaattgcattatttacaagcagca |
26348343 |
T |
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| Q |
106 |
gcacatgaaagtatgagactatatccaccaattcaatttgattcaaagttttgtttggatgatgatgttttaccagatggtacaaaagtgaaaagtggta |
205 |
Q |
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| T |
26348342 |
gcacatgaaagtatgagactatatccaccaattcaatttgattcaaagttttgtttggatgatgatgttttaccagatggtacaaaagtgaaaagtggaa |
26348243 |
T |
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| Q |
206 |
ctagggttacttatcatccttatgcaatgggtaggttggaggaattgtggggtccagattgtttagagtttaagcctgaaaggtggttgaaagatggtgt |
305 |
Q |
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| T |
26348242 |
ctagggttacttatcatccttatgcaatgggtaggttggaggaattgtggggtccagattgtttagagtttaagcctgaaaggtggttgaaagatggtgt |
26348143 |
T |
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| Q |
306 |
gtttcaaccttcaaatcaattcaagtaccctatttttcaagctgggttaagggtttgtattggtaaagaaatggctttgatggaacttaaaagtgtggca |
405 |
Q |
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| T |
26348142 |
gtttcaaccttcaaatcaattcaagtaccctatttttcaagctgggttaagggtttgtattggtaaagaaatggctttgatggaacttaaaagtgtggca |
26348043 |
T |
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| Q |
406 |
atttctttgcttagaaagtttcatattgaattggaa |
441 |
Q |
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| T |
26348042 |
atttctttgcttagaaagtttcatattgaattggaa |
26348007 |
T |
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