View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9852_low_12 (Length: 445)

Name: NF9852_low_12
Description: NF9852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9852_low_12
NF9852_low_12
[»] chr6 (12 HSPs)
chr6 (7-432)||(31566037-31566449)
chr6 (226-428)||(33390832-33391031)
chr6 (228-423)||(33403375-33403567)
chr6 (219-425)||(33265644-33265847)
chr6 (219-425)||(33274788-33274991)
chr6 (228-428)||(33060314-33060511)
chr6 (226-427)||(33307246-33307444)
chr6 (228-425)||(33361260-33361454)
chr6 (233-421)||(33641746-33641931)
chr6 (226-420)||(33412685-33412876)
chr6 (227-428)||(33288334-33288532)
chr6 (226-258)||(9169617-9169649)
[»] chr2 (1 HSPs)
chr2 (228-428)||(17437813-17438010)
[»] scaffold1749 (1 HSPs)
scaffold1749 (228-428)||(905-1102)
[»] scaffold0428 (1 HSPs)
scaffold0428 (228-428)||(9666-9863)
[»] chr4 (6 HSPs)
chr4 (313-427)||(31476222-31476336)
chr4 (290-427)||(31501309-31501446)
chr4 (229-433)||(31496075-31496282)
chr4 (290-426)||(31030513-31030649)
chr4 (290-426)||(31020632-31020768)
chr4 (290-427)||(31488784-31488921)
[»] chr5 (1 HSPs)
chr5 (39-106)||(11662784-11662851)


Alignment Details
Target: chr6 (Bit Score: 370; Significance: 0; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 7 - 432
Target Start/End: Original strand, 31566037 - 31566449
Alignment:
Q  7 tttctcaaagacttgctgccactcttttcgacgataaagacatcgaatttgattgacttaaggtaattcctgaaataggttttcacgaatttgtgttttt 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||    
T  31566037 tttctcaaagacttgctgccactcttttcgacgataaagacatcgaatttgatcgacttaagataattcctgaaataggttttcacgaatttgtgttttt 31566136  T
Q  107 gttaatgggtttttgtcaaataactgttcttgcttatttagaatttttgtttgtgttggaactaaatgagtcggttcctttttgtttgtatattccaata 206  Q
                 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31566137 -------------tgtcaaataactgttcttgcttatttagaatttttgtttgtgttggaactaaatgagtcggttcctttttgtttgtatattccaata 31566223  T
Q  207 tagttctttaacaattgaacttattcagatggctagcagcagcaactcatctacagctcttgtaacttcttcaagaagaaactattattatgatgtattt 306  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31566224 tagttctttaacaattgaacttattcagatggctagcagcagtaactcatctacagctcttgtaacttcttcaagaagaaactattattatgatgtattt 31566323  T
Q  307 gtcactttcagaggtgaagacactcgcaacaatttcattgattttctttttgatgcctttgaaacaaaaggtatttttgtatttcgggatgatacaaatc 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31566324 gtcactttcagaggtgaagacactcgcaacaatttcattgattttctttttgatgcctttgaaacaaaaggtatttttgtatttcgggatgatacaaatc 31566423  T
Q  407 ttcaaaaaggtgaatccatagggcct 432  Q
    ||||||||||||||||||||||||||    
T  31566424 ttcaaaaaggtgaatccatagggcct 31566449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 226 - 428
Target Start/End: Complemental strand, 33391031 - 33390832
Alignment:
Q  226 cttattcagatggctagcagcagcaactcatctacagctcttgtaacttcttcaagaagaaactattattatgatgtatttgtcactttcagaggtgaag 325  Q
    |||||||||||||||||||  |||||||||||| |||||||||| |||||||||| ||||   |||||||||||||| |||||||| ||| |||||||||    
T  33391031 cttattcagatggctagcaatagcaactcatcttcagctcttgtgacttcttcaaaaaga---tattattatgatgtgtttgtcaccttccgaggtgaag 33390935  T
Q  326 acactcgcaacaatttcattgattttctttttgatgcctttgaaacaaaaggtatttttgtatttcgggatgatacaaatcttcaaaaaggtgaatccat 425  Q
    |||||||||||||||||||||||||||||||||||||| | ||||||||||| ||| |||||||||||||| | | ||||||||||||||||||||||||    
T  33390934 acactcgcaacaatttcattgattttctttttgatgccctggaaacaaaaggcattcttgtatttcgggataacagaaatcttcaaaaaggtgaatccat 33390835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 228 - 423
Target Start/End: Complemental strand, 33403567 - 33403375
Alignment:
Q  228 tattcagatggctagcagcagcaactcatctacagctcttgtaacttcttcaagaagaaactattattatgatgtatttgtcactttcagaggtgaagac 327  Q
    ||||||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||   |||||| ||||| ||| |||| || ||||||||||||    
T  33403567 tattcagatggctagcagcagcaactcgtcttcagctcttgtgacttcttcaagaagaaa---ttattacgatgtgtttatcacctttagaggtgaagac 33403471  T
Q  328 actcgcaacaatttcattgattttctttttgatgcctttgaaacaaaaggtatttttgtatttcgggatgatacaaatcttcaaaaaggtgaatcc 423  Q
    ||||| |||||||||| ||||||||||||||||||| ||||||||||||| ||||||| |||||| ||||| || ||||||||| | |||||||||    
T  33403470 actcggaacaatttcactgattttctttttgatgcccttgaaacaaaaggcatttttgcatttcgagatgacactaatcttcaacagggtgaatcc 33403375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 219 - 425
Target Start/End: Complemental strand, 33265847 - 33265644
Alignment:
Q  219 aattgaacttattcagatggctagcagcagcaactcatctacagctcttgtaacttcttcaagaagaaactattattatgatgtatttgtcactttcaga 318  Q
    |||| ||||||||||||||||||||| ||||||||||||| ||| |||||  ||||| |||||||||||   ||||||||||||||||||||| ||||||    
T  33265847 aatttaacttattcagatggctagcaccagcaactcatcttcagttcttgggacttcatcaagaagaaa---ttattatgatgtatttgtcaccttcaga 33265751  T
Q  319 ggtgaagacactcgcaacaatttcattgattttctttttgatgcctttgaaacaaaaggtatttttgtatttcgggatgatacaaatcttcaaaaaggtg 418  Q
    |||||||| ||||| ||||||||||  |||||||||||||||||| || |||||||||| ||| ||||||||  |||||| || ||||||| ||||||||    
T  33265750 ggtgaagatactcggaacaatttcacagattttctttttgatgcccttcaaacaaaaggcattattgtattttcggatgacactaatcttccaaaaggtg 33265651  T
Q  419 aatccat 425  Q
    |||||||    
T  33265650 aatccat 33265644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 219 - 425
Target Start/End: Complemental strand, 33274991 - 33274788
Alignment:
Q  219 aattgaacttattcagatggctagcagcagcaactcatctacagctcttgtaacttcttcaagaagaaactattattatgatgtatttgtcactttcaga 318  Q
    |||| ||||||||||||||||||||| ||||||||||||| ||| |||||  ||||| |||||||||||   ||||||||||||||||||||| ||||||    
T  33274991 aatttaacttattcagatggctagcaccagcaactcatcttcagttcttgggacttcatcaagaagaaa---ttattatgatgtatttgtcaccttcaga 33274895  T
Q  319 ggtgaagacactcgcaacaatttcattgattttctttttgatgcctttgaaacaaaaggtatttttgtatttcgggatgatacaaatcttcaaaaaggtg 418  Q
    |||||||| ||||| ||||||||||  |||||||||||||||||| || |||||||||| ||| ||||||||  |||||| || ||||||| ||||||||    
T  33274894 ggtgaagatactcggaacaatttcacagattttctttttgatgcccttcaaacaaaaggcattattgtattttcggatgacactaatcttccaaaaggtg 33274795  T
Q  419 aatccat 425  Q
    |||||||    
T  33274794 aatccat 33274788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 228 - 428
Target Start/End: Complemental strand, 33060511 - 33060314
Alignment:
Q  228 tattcagatggctagcagcagcaactcatctacagctcttgtaacttcttcaagaagaaactattattatgatgtatttgtcactttcagaggtgaagac 327  Q
    |||||||||||||||||||||||| |||||| |||||||||| ||||||||||  |||||  || |||||||||| |||||||| || |||||||||||     
T  33060511 tattcagatggctagcagcagcaaatcatcttcagctcttgtgacttcttcaa--agaaaa-atcattatgatgtgtttgtcacctttagaggtgaagat 33060415  T
Q  328 actcgcaacaatttcattgattttctttttgatgcctttgaaacaaaaggtatttttgtatttcgggatgatacaaatcttcaaaaaggtgaatccatag 427  Q
    |||||||||||||||| ||||||||||||||||||| ||||||||||||| ||| | |||||||||||||  |  ||||||||||||||||||| |||||    
T  33060414 actcgcaacaatttcactgattttctttttgatgcccttgaaacaaaaggcattatggtatttcgggatgtcattaatcttcaaaaaggtgaatgcatag 33060315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 226 - 427
Target Start/End: Complemental strand, 33307444 - 33307246
Alignment:
Q  226 cttattcagatggctagcagcagcaactcatctacagctcttgtaacttcttcaagaagaaactattattatgatgtatttgtcactttcagaggtgaag 325  Q
    |||| ||||||||||||||||| ||| || |||  ||||||||| |||||||||||||  |||||||||   ||||| |||||||| |||||||||||||    
T  33307444 cttaatcagatggctagcagcaacaattcttctttagctcttgtgacttcttcaagaaacaactattat---gatgtgtttgtcaccttcagaggtgaag 33307348  T
Q  326 acactcgcaacaatttcattgattttctttttgatgcctttgaaacaaaaggtatttttgtatttcgggatgatacaaatcttcaaaaaggtgaatccat 425  Q
    ||||||||||||| || | ||||||||||||||||||| ||||||||||||| ||||||| |||||||||||| || ||||||||||| |||||||| ||    
T  33307347 acactcgcaacaactttactgattttctttttgatgcccttgaaacaaaaggcatttttgcatttcgggatgacactaatcttcaaaagggtgaatctat 33307248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 228 - 425
Target Start/End: Complemental strand, 33361454 - 33361260
Alignment:
Q  228 tattcagatggctagcagcagcaactcatctacagctcttgtaacttcttcaagaagaaactattattatgatgtatttgtcactttcagaggtgaagac 327  Q
    |||||||||||||||||||| |||||||||| |||||||||| ||||||||||  |||||  || |||||||||| |||||||  || ||||||||||||    
T  33361454 tattcagatggctagcagcaacaactcatcttcagctcttgtgacttcttcaa--agaaaa-atcattatgatgtgtttgtcatctttagaggtgaagac 33361358  T
Q  328 actcgcaacaatttcattgattttctttttgatgcctttgaaacaaaaggtatttttgtatttcgggatgatacaaatcttcaaaaaggtgaatccat 425  Q
    |||||||||||||||| ||||||||||||||||||| || |||||||||| ||| ||||||||  |||||| || ||||||| |||||||||||||||    
T  33361357 actcgcaacaatttcactgattttctttttgatgcccttcaaacaaaaggcattattgtatttttggatgacactaatcttccaaaaggtgaatccat 33361260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 233 - 421
Target Start/End: Original strand, 33641746 - 33641931
Alignment:
Q  233 agatggctagcagcagcaactcatctacagctcttgtaacttcttcaagaagaaactattattatgatgtatttgtcactttcagaggtgaagacactcg 332  Q
    |||||||||| |||||||||||||||  ||||||||||||||||||||  |||||  ||||||||||||| |||||||| | ||||||||||||||||||    
T  33641746 agatggctagtagcagcaactcatctttagctcttgtaacttcttcaa--agaaaa-attattatgatgtgtttgtcacctacagaggtgaagacactcg 33641842  T
Q  333 caacaatttcattgattttctttttgatgcctttgaaacaaaaggtatttttgtatttcgggatgatacaaatcttcaaaaaggtgaat 421  Q
    ||||||||| | ||||||||||||||||||| ||||| ||||||| ||| | |||||||||||||| |  |||||||||||||||||||    
T  33641843 caacaatttgactgattttctttttgatgcccttgaatcaaaaggcattatggtatttcgggatgacattaatcttcaaaaaggtgaat 33641931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 226 - 420
Target Start/End: Complemental strand, 33412876 - 33412685
Alignment:
Q  226 cttattcagatggctagcagcagcaactcatctacagctcttgtaacttcttcaagaagaaactattattatgatgtatttgtcactttcagaggtgaag 325  Q
    |||| ||| ||||| | ||| ||||||||||||  ||||||||| |||||||||||||||||   |||||||||||| |||||||| |||||||||||||    
T  33412876 cttaatcaaatggccaacagtagcaactcatctttagctcttgtgacttcttcaagaagaaa---ttattatgatgtgtttgtcaccttcagaggtgaag 33412780  T
Q  326 acactcgcaacaatttcattgattttctttttgatgcctttgaaacaaaaggtatttttgtatttcgggatgatacaaatcttcaaaaaggtgaa 420  Q
    |||||||||||||||||| ||||| ||||||||||||  ||||||| |||||||||| || |||| ||||||| ||||||||| |||||||||||    
T  33412779 acactcgcaacaatttcactgattatctttttgatgcacttgaaaccaaaggtatttatgcatttagggatgacacaaatcttaaaaaaggtgaa 33412685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 227 - 428
Target Start/End: Complemental strand, 33288532 - 33288334
Alignment:
Q  227 ttattcagatggctagcagcagcaactcatctacagctcttgtaacttcttcaagaagaaactattattatgatgtatttgtcactttcagaggtgaaga 326  Q
    ||||||||||||||||||||||||||||||| | |||| | || || |||  ||| |||||   | |||| || || ||| |||| || ||||| || ||    
T  33288532 ttattcagatggctagcagcagcaactcatccatagctatggtgacatctagaaggagaaa---tcattacgacgtgtttatcacctttagaggcgatga 33288436  T
Q  327 cactcgcaacaatttcattgattttctttttgatgcctttgaaacaaaaggtatttttgtatttcgggatgatacaaatcttcaaaaaggtgaatccata 426  Q
    ||||||||||||||||| || || ||| || |||||  || ||||||| ||||||| || |||| ||||||| || ||||||||||||||||||||||||    
T  33288435 cactcgcaacaatttcactggttatctattagatgctcttaaaacaaacggtatttatgcatttagggatgacaccaatcttcaaaaaggtgaatccata 33288336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 226 - 258
Target Start/End: Complemental strand, 9169649 - 9169617
Alignment:
Q  226 cttattcagatggctagcagcagcaactcatct 258  Q
    ||||||| |||||||||||||||||||||||||    
T  9169649 cttattctgatggctagcagcagcaactcatct 9169617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 98; Significance: 4e-48; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 228 - 428
Target Start/End: Original strand, 17437813 - 17438010
Alignment:
Q  228 tattcagatggctagcagcagcaactcatctacagctcttgtaacttcttcaagaagaaactattattatgatgtatttgtcactttcagaggtgaagac 327  Q
    ||||||||||||||| |||||||| ||| || |||||||||| ||||||||||  |||||  || |||||||||| |||||||| || |||||||||||     
T  17437813 tattcagatggctagtagcagcaaatcaacttcagctcttgtgacttcttcaa--agaaaa-atcattatgatgtgtttgtcacctttagaggtgaagat 17437909  T
Q  328 actcgcaacaatttcattgattttctttttgatgcctttgaaacaaaaggtatttttgtatttcgggatgatacaaatcttcaaaaaggtgaatccatag 427  Q
    |||||||||||||||| ||||||||||||||| ||| |||||| |||||  ||||||| |||||| ||||| || |||||||||||||||||||||||||    
T  17437910 actcgcaacaatttcactgattttctttttgacgcccttgaaagaaaagacatttttgcatttcgagatgacactaatcttcaaaaaggtgaatccatag 17438009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1749 (Bit Score: 79; Significance: 9e-37; HSPs: 1)
Name: scaffold1749
Description:

Target: scaffold1749; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 228 - 428
Target Start/End: Complemental strand, 1102 - 905
Alignment:
Q  228 tattcagatggctagcagcagcaactcatctacagctcttgtaacttcttcaagaagaaactattattatgatgtatttgtcactttcagaggtgaagac 327  Q
    ||||||||||||||||||||||||||| ||||| ||||| ||  |||   |||| |||||   || |||||| || |||||||| ||||||||||||||     
T  1102 tattcagatggctagcagcagcaactcgtctacggctctggtgcctttgccaaggagaaa---ttgttatgacgtgtttgtcaccttcagaggtgaagat 1006  T
Q  328 actcgcaacaatttcattgattttctttttgatgcctttgaaacaaaaggtatttttgtatttcgggatgatacaaatcttcaaaaaggtgaatccatag 427  Q
    |||||||||||||||| | |||||||||||| |||| |||||| ||||||||||| ||  ||  ||||||| |||||||||| ||| |||||||||||||    
T  1005 actcgcaacaatttcactaattttctttttgctgcccttgaaagaaaaggtatttatgctttcagggatgacacaaatcttccaaagggtgaatccatag 906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 79; Significance: 9e-37; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 228 - 428
Target Start/End: Complemental strand, 9863 - 9666
Alignment:
Q  228 tattcagatggctagcagcagcaactcatctacagctcttgtaacttcttcaagaagaaactattattatgatgtatttgtcactttcagaggtgaagac 327  Q
    ||||||||||||||||||||||||||| ||||| ||||| ||  |||   |||| |||||   || |||||| || |||||||| ||||||||||||||     
T  9863 tattcagatggctagcagcagcaactcgtctacggctctggtgcctttgccaaggagaaa---ttgttatgacgtgtttgtcaccttcagaggtgaagat 9767  T
Q  328 actcgcaacaatttcattgattttctttttgatgcctttgaaacaaaaggtatttttgtatttcgggatgatacaaatcttcaaaaaggtgaatccatag 427  Q
    |||||||||||||||| | |||||||||||| |||| |||||| ||||||||||| ||  ||  ||||||| |||||||||| ||| |||||||||||||    
T  9766 actcgcaacaatttcactaattttctttttgctgcccttgaaagaaaaggtatttatgctttcagggatgacacaaatcttccaaagggtgaatccatag 9667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 1e-29; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 313 - 427
Target Start/End: Original strand, 31476222 - 31476336
Alignment:
Q  313 ttcagaggtgaagacactcgcaacaatttcattgattttctttttgatgcctttgaaacaaaaggtatttttgtatttcgggatgatacaaatcttcaaa 412  Q
    |||||||||||||| |||||||||||||||| |||||| |||||||||||| | |||  ||||||| |||||| |||| ||||||| || ||||||||||    
T  31476222 ttcagaggtgaagatactcgcaacaatttcactgatttcctttttgatgccctcgaagaaaaaggtgtttttgcatttagggatgacactaatcttcaaa 31476321  T
Q  413 aaggtgaatccatag 427  Q
    |||||||||||||||    
T  31476322 aaggtgaatccatag 31476336  T

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Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 290 - 427
Target Start/End: Original strand, 31501309 - 31501446
Alignment:
Q  290 attattatgatgtatttgtcactttcagaggtgaagacactcgcaacaatttcattgattttctttttgatgcctttgaaacaaaaggtatttttgtatt 389  Q
    ||||||||||||  ||||||||||| |||||||||||||||||||||||||||| | ||  |||||||||||||||  | | | |||| ||| ||| |||    
T  31501309 attattatgatgcgtttgtcacttttagaggtgaagacactcgcaacaatttcacttatcatctttttgatgccttcaacagagaaggcattcttgcatt 31501408  T
Q  390 tcgggatgatacaaatcttcaaaaaggtgaatccatag 427  Q
    | ||||||| || ||||||| |||||||||||||||||    
T  31501409 tagggatgacactaatcttccaaaaggtgaatccatag 31501446  T

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Target: chr4; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 229 - 433
Target Start/End: Original strand, 31496075 - 31496282
Alignment:
Q  229 attcagatggctagcagcagcaactca---tctacagctcttgtaacttcttcaagaagaaactattattatgatgtatttgtcactttcagaggtgaag 325  Q
    ||||||||||||||||||||||||||    ||| ||||||| || || ||  |||| || | | || ||||||| || |||||||| || |||||||| |    
T  31496075 attcagatggctagcagcagcaactccacttcttcagctctagtgacatcgccaaggaggagcaatcattatgacgtgtttgtcacctttagaggtgagg 31496174  T
Q  326 acactcgcaacaatttcattgattttctttttgatgcctttgaaacaaaaggtatttttgtatttcgggatgatacaaatcttcaaaaaggtgaatccat 425  Q
    |||||||||||||||||| ||||  |||||||||| ||||  | | | |||| |||| || |||| | ||||| || ||||||| |||||||||||||||    
T  31496175 acactcgcaacaatttcactgatcatctttttgataccttccacagagaaggcatttctgcatttagagatgacactaatcttccaaaaggtgaatccat 31496274  T
Q  426 agggccta 433  Q
    ||| ||||    
T  31496275 aggaccta 31496282  T

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Target: chr4; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 290 - 426
Target Start/End: Complemental strand, 31030649 - 31030513
Alignment:
Q  290 attattatgatgtatttgtcactttcagaggtgaagacactcgcaacaatttcattgattttctttttgatgcctttgaaacaaaaggtatttttgtatt 389  Q
    ||||||||||||| |||||||| || ||||| ||||| ||||||  ||| |||||||||  |||||||| |||| || ||| |||||| ||||||| |||    
T  31030649 attattatgatgtgtttgtcacctttagaggcgaagatactcgcttcaacttcattgatcatctttttgctgcccttcaaagaaaaggcatttttgcatt 31030550  T
Q  390 tcgggatgatacaaatcttcaaaaaggtgaatccata 426  Q
    | | || || || ||||||||||||||||||||||||    
T  31030549 tagagacgacactaatcttcaaaaaggtgaatccata 31030513  T

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Target: chr4; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 290 - 426
Target Start/End: Complemental strand, 31020768 - 31020632
Alignment:
Q  290 attattatgatgtatttgtcactttcagaggtgaagacactcgcaacaatttcattgattttctttttgatgcctttgaaacaaaaggtatttttgtatt 389  Q
    ||||||||||||| |||||||| || ||||| ||||| ||||||  ||| |||||||||  |||||||| |||| || ||| |||||| ||||||| |||    
T  31020768 attattatgatgtgtttgtcacctttagaggcgaagatactcgcttcaacttcattgatcatctttttgctgcccttcaaagaaaaggcatttttgcatt 31020669  T
Q  390 tcgggatgatacaaatcttcaaaaaggtgaatccata 426  Q
    | | || ||  | ||||||||||||||||||||||||    
T  31020668 tagagacgacgctaatcttcaaaaaggtgaatccata 31020632  T

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Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 290 - 427
Target Start/End: Original strand, 31488784 - 31488921
Alignment:
Q  290 attattatgatgtatttgtcactttcagaggtgaagacactcgcaacaatttcattgattttctttttgatgcctttgaaacaaaaggtatttttgtatt 389  Q
    |||||||||| || |||||||| |||||||||||||| ||||||  ||| || | ||||  |||||||| |||| || ||| |||||| |||||||  ||    
T  31488784 attattatgacgtgtttgtcaccttcagaggtgaagatactcgcttcaactttactgatcatctttttgctgcccttcaaagaaaaggcatttttgcgtt 31488883  T
Q  390 tcgggatgatacaaatcttcaaaaaggtgaatccatag 427  Q
    | | ||||| || || ||||||||||||||||| ||||    
T  31488884 tagagatgacactaagcttcaaaaaggtgaatcgatag 31488921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 39 - 106
Target Start/End: Complemental strand, 11662851 - 11662784
Alignment:
Q  39 gataaagacatcgaatttgattgacttaaggtaattcctgaaataggttttcacgaatttgtgttttt 106  Q
    ||||||||||| ||||||||  || |||||||||||| |||||| |||||| |  |||||||||||||    
T  11662851 gataaagacattgaatttgagcgatttaaggtaattcttgaaatcggttttgattaatttgtgttttt 11662784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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