View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9852_low_16 (Length: 411)
Name: NF9852_low_16
Description: NF9852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9852_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 317; Significance: 1e-179; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 13 - 393
Target Start/End: Complemental strand, 21122302 - 21121922
Alignment:
| Q |
13 |
cacgttggaaaccatccttggaagcaattgttgtctgtctccgtcctctccacaagaacctccacctctctcaggagattttccacatcaatcaaccact |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||||| |||||||||||| ||| ||||| |
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| T |
21122302 |
cacgttggaaaccatccttggaagcaattgttgtctgtctccgtcctttgtacaagaacctccacctctctaaggagtttttccacatcattcagccact |
21122203 |
T |
|
| Q |
113 |
tctccactggtttttcaattacttcagttctctctttggcttgttcaacacgagttagcaagttatctctttcagatgtcagtgcctccttttctttctc |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
21122202 |
tctccactggtttttcaattacttcagttctctctttggctcgttcaacacgaattagcaagttatctctttcagatgtcagtgcttccttttctttctc |
21122103 |
T |
|
| Q |
213 |
aagatcattgattgtgttattaacacaaagaaggtattgaacttcgcgaatcgctggtcccgccaaatacttacccacattacttgcaatagtcgcaaca |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||| ||||||||||| ||| | |
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| T |
21122102 |
aagatcattgattgtgttattaacacaaagaaggtattgaacttcgcgaattgctggtcccgccaaatattgacccacattagttgcaatagtcacaaaa |
21122003 |
T |
|
| Q |
313 |
atatttgccatcaagtaaaggcaacctgataatataatcatgtgcacaaaccagtcaaagatctatcaaagatggaatact |
393 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21122002 |
atatttgccatcaagtaaaggcaacctgataatataatcatgtgcacaaaccagtcaaagatctatcaaagatggaatact |
21121922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 13 - 380
Target Start/End: Complemental strand, 21114875 - 21114508
Alignment:
| Q |
13 |
cacgttggaaaccatccttggaagcaattgttgtctgtctccgtcctctccacaagaacctccacctctctcaggagattttccacatcaatcaaccact |
112 |
Q |
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|||||||||||||||||||| ||||||||| |||||| || ||||| | ||||||||| ||||||||||||| ||||||||| ||| |||||||||||| |
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| T |
21114875 |
cacgttggaaaccatccttgaaagcaattggcgtctgtttctgtcctttgcacaagaacatccacctctctcaagagattttctacaacaatcaaccact |
21114776 |
T |
|
| Q |
113 |
tctccactggtttttcaattacttcagttctctctttggcttgttcaacacgagttagcaagttatctctttcagatgtcagtgcctccttttctttctc |
212 |
Q |
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||||||||||||||||||||| ||||||| |||| ||||||| |||| ||| | | ||| || ||||||||||||||||| ||||||||||| |||| |
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| T |
21114775 |
tctccactggtttttcaattatttcagttttctccaaggcttgtgcaacgcgaatcaacaaattgtctctttcagatgtcagcgcctccttttcagtctc |
21114676 |
T |
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| Q |
213 |
aagatcattgattgtgttattaacacaaagaaggtattgaacttcgcgaatcgctggtcccgccaaatacttacccacattacttgcaatagtcgcaaca |
312 |
Q |
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||||||||||||| |||||||||||||||| |||||| |||||||| | ||||||| ||||||| |||||||||||| |||||| |||| ||||| |
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| T |
21114675 |
aagatcattgattacattattaacacaaagaaagtattgtacttcgcggaatattggtccccccaaatatttacccacattagttgcaacagtcacaaca |
21114576 |
T |
|
| Q |
313 |
atatttgccatcaagtaaaggcaacctgataatataatcatgtgcacaaaccagtcaaagatctatca |
380 |
Q |
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|||||||||||||| ||||| ||||||||||| | |||| ||| |||||| ||||||||||| |||| |
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| T |
21114575 |
atatttgccatcaaataaagacaacctgataacagaatcgtgtacacaaattagtcaaagatccatca |
21114508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 116 - 218
Target Start/End: Original strand, 23011090 - 23011192
Alignment:
| Q |
116 |
ccactggtttttcaattacttcagttctctctttggcttgttcaacacgagttagcaagttatctctttcagatgtcagtgcctccttttctttctcaag |
215 |
Q |
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|||||||| | |||||| |||| ||||| | ||||||||||||||||||| | ||||||||||||||| || ||| ||| |||||| |||||||| |
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| T |
23011090 |
ccactggtatctcaatttcttcggttctatgtttggcttgttcaacacgaaccaacaagttatctctttcgaataccagctccttcttttcattctcaag |
23011189 |
T |
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| Q |
216 |
atc |
218 |
Q |
| |
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||| |
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|
| T |
23011190 |
atc |
23011192 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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