View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9852_low_18 (Length: 402)
Name: NF9852_low_18
Description: NF9852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9852_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 63 - 339
Target Start/End: Original strand, 19598471 - 19598744
Alignment:
| Q |
63 |
tttgcttggagtctttcacatttccaggtaatttgctcggatacatagcgccgacttggagtgtttgacatctcaatgcccgggcacaaagttctggata |
162 |
Q |
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| T |
19598471 |
tttgcttggagtctttcacatttccaggt---ttgctcggatacatagtgccggcttggagtgtttgacatctcaatgcccgggaacaaagttctggata |
19598567 |
T |
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| Q |
163 |
agagtctttcacatgtctatgttttctcgagaatgaagtgtcgggttggagtgtcgtgttagtttttgctccttagtcgtatgctcccttcgtttgtagg |
262 |
Q |
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| T |
19598568 |
agagtctttcacatgtctatgttttctcgagaatgaagtgtcgggttggagtgtcgtgttagtttttgctccttagtcgtatgctcccttcgtttgcagg |
19598667 |
T |
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| Q |
263 |
atttgaggtctgcttggtaggttggatcttcgtccttttatacatagataatggtggtgtatcttgtggaagagacg |
339 |
Q |
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| T |
19598668 |
atttgaggtctgcttggtaggttggatctccgtccttttatacatagataatgatggtgtatcttgtggaagagacg |
19598744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 350 - 387
Target Start/End: Original strand, 19599580 - 19599617
Alignment:
| Q |
350 |
taattaatgttcacggatgatatttaccccatattctt |
387 |
Q |
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| T |
19599580 |
taattaatgttcatggatgatatttaccccatattctt |
19599617 |
T |
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