View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9852_low_19 (Length: 398)
Name: NF9852_low_19
Description: NF9852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9852_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 19 - 388
Target Start/End: Original strand, 54616223 - 54616581
Alignment:
| Q |
19 |
atccaaggcttgatttcaatattgatgatctatttgaaaaagaggtacgtaataaagaatatgcagatggaagaatttcacttttcacttttcacttaat |
118 |
Q |
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| T |
54616223 |
atccaaggcttgatttcaatattgatgatctatttgaaaaagaggtacgtaataaagaatatgcagatggaagaatttcacttttcacttttcactta-- |
54616320 |
T |
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| Q |
119 |
tatagcttaattttaaatctgtaatattaatatgttgattccttacacaggtttttcctacttgtgatgcaaatgcatcttttcaagctatgggaatgtc |
218 |
Q |
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| T |
54616321 |
---------attttaaatctgtaatattaatatgctgattcctcacacaggtttttcctaattgtgatgcaaatgcatcttttcaagctatgggaatgtc |
54616411 |
T |
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| Q |
219 |
aacaggattgaatagtaacaatccttatcttcagttcaattcaccacagcaatttgttccatatggtggattagatgctggaatgaacccttcagatatg |
318 |
Q |
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| T |
54616412 |
aacaggattgaatagtaacaatccttatcttcagttcaattcaccacagcaatttgttccatatggtggattagatgctggaatgaacccttcagatatg |
54616511 |
T |
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| Q |
319 |
ggacttagaaggagcataagtgcccctgtatcccttcctcaaacttttattgattcttcttgtttctctg |
388 |
Q |
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| T |
54616512 |
ggacttagaaggagcataagtgcccctgtatccattcctcaaacttttattgattcttcttgtttctctg |
54616581 |
T |
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