View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9852_low_2 (Length: 687)
Name: NF9852_low_2
Description: NF9852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9852_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 479; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 20 - 674
Target Start/End: Complemental strand, 39411716 - 39411058
Alignment:
| Q |
20 |
gttggtacataaagaaccatttaaattaaaagtgtaaaataaaattagagaatttattttttcatcattcgatcttctcgtgcatatgttgtttttccaa |
119 |
Q |
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| T |
39411716 |
gttggtacataaagaaccagttaaattaaaagtgtaaaataaaattagagaatttattttttcatcattcgatcttctcgtgcatctgttgtttttccaa |
39411617 |
T |
|
| Q |
120 |
tttgatctaagtttggtttttataatccaaagtgtatttcatgtttttcggattataaaatatgaaatgtatatttctacattttgatcccctcatctaa |
219 |
Q |
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| T |
39411616 |
tttgatctaagtttggtttttataatccaaagtgtatttcatgtttttcgaattataaaatataaaatatatatttctacattttgatcccctcatctaa |
39411517 |
T |
|
| Q |
220 |
aaggacaattttttctnnnnnnnnnnt--tacttcaaattatatactttagagtgcgtttttccgctttcggattatataatccaaaatgcataattaga |
317 |
Q |
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| T |
39411516 |
aaggacaattttttctaaaaaaaaaaaactacttcaaattatatactctagagtgtgtttttccgctttcggattatataatccaaaatgcataattaga |
39411417 |
T |
|
| Q |
318 |
catcatctcactatctttctctccttccactccatttaccnnnnnnnnnnnnc--ctttattttggcgaaaacatgatttaatactccattctaatcatc |
415 |
Q |
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||| |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39411416 |
cattatctcactatctttctctccttccactccatttaccaaaaaaaaaaaacacctttattttggcgaaaacatgatttaatactccattctaatcatc |
39411317 |
T |
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| Q |
416 |
aatggaacacatgcacattattttcgtttgaacgtaaagataatatgactctaaaacatttctcatttaatttctaagaattttccatttcaatcacttc |
515 |
Q |
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| T |
39411316 |
aatggagtgcatgcacattattttcgtttgaacgtaaagataatatgactctaaaacatttctcatttaatttctaagaattttccgtttcaatcacttc |
39411217 |
T |
|
| Q |
516 |
accaactttggattggcgcattcagattatataatttaaattttttaacaatgcagtttgaattatataatctgaactttgtatatacaaaaacaattaa |
615 |
Q |
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| T |
39411216 |
accaattttgtattggcgcattcatattatataatctaaattttttaacaacgcagtttggattttataatctgaactttgtatatacaaaaacaattag |
39411117 |
T |
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| Q |
616 |
tttttcgaaagataatttgaattatttcagatatggatgctcatattgaccaccctatg |
674 |
Q |
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| T |
39411116 |
tttttcgaaggataatttgaattatttcaaatatggatgctcatattgaccaccctatg |
39411058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 137 - 185
Target Start/End: Complemental strand, 8891588 - 8891540
Alignment:
| Q |
137 |
ttttataatccaaagtgtatttcatgtttttcggattataaaatatgaa |
185 |
Q |
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| T |
8891588 |
ttttataatctaaagcatatttcatagttttcggattataaaatatgaa |
8891540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 434 - 499
Target Start/End: Complemental strand, 16836248 - 16836183
Alignment:
| Q |
434 |
tattttcgtttgaacgtaaagataatatgactctaaaacatttctcatttaatttctaagaatttt |
499 |
Q |
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|||||| || ||| |||||||||||| |||||||||||| || ||||||| ||||||||| ||||| |
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| T |
16836248 |
tatttttgtctgatcgtaaagataatgtgactctaaaaccttcctcatttcatttctaagcatttt |
16836183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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