View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9852_low_20 (Length: 388)

Name: NF9852_low_20
Description: NF9852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9852_low_20
NF9852_low_20
[»] chr5 (21 HSPs)
chr5 (166-319)||(20722896-20723048)
chr5 (18-166)||(20728833-20728981)
chr5 (18-166)||(19279010-19279158)
chr5 (18-166)||(5734653-5734800)
chr5 (33-166)||(35190210-35190343)
chr5 (18-166)||(36418186-36418334)
chr5 (19-166)||(1722682-1722828)
chr5 (29-166)||(26275689-26275826)
chr5 (29-166)||(30737939-30738075)
chr5 (29-159)||(38405235-38405366)
chr5 (29-166)||(13543392-13543527)
chr5 (321-378)||(20722577-20722634)
chr5 (76-166)||(18320950-18321040)
chr5 (29-102)||(13543285-13543358)
chr5 (29-113)||(35190103-35190187)
chr5 (18-113)||(18249146-18249241)
chr5 (29-113)||(19278903-19278987)
chr5 (37-113)||(20728734-20728810)
chr5 (29-113)||(38405396-38405479)
chr5 (71-113)||(18238082-18238124)
chr5 (37-110)||(26275852-26275925)
[»] chr8 (24 HSPs)
chr8 (18-166)||(30576457-30576605)
chr8 (18-166)||(6235917-6236065)
chr8 (20-167)||(16197332-16197479)
chr8 (18-128)||(14871100-14871210)
chr8 (48-166)||(44040979-44041097)
chr8 (18-166)||(8714151-8714298)
chr8 (29-166)||(39701189-39701327)
chr8 (29-166)||(9276788-9276925)
chr8 (18-166)||(23553542-23553696)
chr8 (29-162)||(4613938-4614071)
chr8 (29-166)||(25737302-25737437)
chr8 (29-114)||(14871206-14871291)
chr8 (18-111)||(30576339-30576432)
chr8 (24-113)||(34686748-34686837)
chr8 (18-114)||(5358919-5359015)
chr8 (29-113)||(40553098-40553182)
chr8 (18-101)||(39701072-39701154)
chr8 (19-113)||(8714034-8714128)
chr8 (29-113)||(9276681-9276765)
chr8 (22-113)||(16197220-16197310)
chr8 (29-113)||(6236088-6236172)
chr8 (29-113)||(23553719-23553802)
chr8 (18-97)||(44041154-44041233)
chr8 (125-166)||(40553034-40553075)
[»] chr7 (29 HSPs)
chr7 (30-166)||(33235340-33235476)
chr7 (29-166)||(8039950-8040086)
chr7 (19-166)||(42990689-42990836)
chr7 (29-167)||(5559308-5559445)
chr7 (29-166)||(5805344-5805479)
chr7 (33-166)||(1441160-1441292)
chr7 (29-166)||(27995260-27995396)
chr7 (29-166)||(39958983-39959119)
chr7 (18-166)||(35215112-35215260)
chr7 (59-166)||(20184072-20184178)
chr7 (18-96)||(5075471-5075549)
chr7 (18-128)||(28256682-28256791)
chr7 (36-113)||(1348847-1348924)
chr7 (29-113)||(5559469-5559553)
chr7 (29-113)||(5805237-5805321)
chr7 (18-113)||(20183954-20184049)
chr7 (29-166)||(1348947-1349074)
chr7 (18-113)||(1286556-1286651)
chr7 (49-166)||(29590796-29590912)
chr7 (18-113)||(8039834-8039927)
chr7 (29-113)||(20366246-20366330)
chr7 (29-113)||(27995419-27995502)
chr7 (29-113)||(39958877-39958960)
chr7 (61-113)||(10620092-10620144)
chr7 (54-113)||(33235258-33235317)
chr7 (18-113)||(35214995-35215089)
chr7 (59-113)||(28256788-28256842)
chr7 (18-83)||(10619988-10620052)
chr7 (29-94)||(31175814-31175879)
[»] chr6 (16 HSPs)
chr6 (29-166)||(17179823-17179959)
chr6 (29-166)||(9902098-9902235)
chr6 (49-166)||(17132007-17132124)
chr6 (18-166)||(24139178-24139327)
chr6 (46-160)||(10963047-10963161)
chr6 (31-166)||(11527833-11527968)
chr6 (29-166)||(28630319-28630444)
chr6 (18-113)||(10962926-10963021)
chr6 (29-113)||(28630467-28630551)
chr6 (18-128)||(2839887-2839997)
chr6 (65-113)||(2839842-2839890)
chr6 (29-85)||(9946584-9946640)
chr6 (29-112)||(10407584-10407667)
chr6 (49-82)||(17131740-17131773)
chr6 (29-102)||(24139361-24139433)
chr6 (29-109)||(11527726-11527806)
[»] chr3 (14 HSPs)
chr3 (29-166)||(3087238-3087375)
chr3 (18-166)||(31247314-31247462)
chr3 (29-166)||(53783181-53783318)
chr3 (30-166)||(4276442-4276576)
chr3 (18-113)||(21376754-21376849)
chr3 (29-128)||(21376846-21376945)
chr3 (19-128)||(14629404-14629513)
chr3 (18-113)||(35555824-35555919)
chr3 (29-113)||(53783074-53783158)
chr3 (18-113)||(14629510-14629605)
chr3 (59-128)||(35555758-35555827)
chr3 (18-113)||(4276323-4276419)
chr3 (18-113)||(24707595-24707690)
chr3 (29-111)||(31247487-31247569)
[»] chr4 (16 HSPs)
chr4 (29-166)||(52866152-52866288)
chr4 (23-166)||(30542926-30543068)
chr4 (29-113)||(52181914-52181998)
chr4 (71-166)||(31229491-31229586)
chr4 (29-166)||(8408540-8408680)
chr4 (29-166)||(52567882-52568017)
chr4 (18-113)||(19681376-19681471)
chr4 (18-128)||(52181995-52182104)
chr4 (35-113)||(52568040-52568118)
chr4 (59-166)||(5387409-5387516)
chr4 (18-113)||(19632088-19632183)
chr4 (29-111)||(30542819-30542901)
chr4 (29-113)||(31229609-31229693)
chr4 (76-166)||(19631975-19632065)
chr4 (118-166)||(19681494-19681542)
chr4 (29-113)||(42115771-42115855)
[»] chr2 (10 HSPs)
chr2 (33-166)||(11871539-11871672)
chr2 (37-166)||(39301621-39301750)
chr2 (18-166)||(15506293-15506441)
chr2 (18-166)||(20535630-20535778)
chr2 (71-166)||(19080934-19081029)
chr2 (48-166)||(27893261-27893379)
chr2 (29-113)||(36196345-36196429)
chr2 (18-113)||(20535801-20535896)
chr2 (29-102)||(39301514-39301587)
chr2 (59-113)||(19080857-19080911)
[»] chr1 (17 HSPs)
chr1 (18-166)||(10686384-10686532)
chr1 (18-162)||(8902949-8903093)
chr1 (29-166)||(4030441-4030578)
chr1 (29-158)||(4772292-4772420)
chr1 (29-166)||(34254804-34254939)
chr1 (18-166)||(29418833-29418981)
chr1 (18-113)||(27351385-27351480)
chr1 (29-102)||(49650869-49650942)
chr1 (30-113)||(10686555-10686638)
chr1 (48-113)||(39302483-39302548)
chr1 (33-109)||(27351257-27351333)
chr1 (29-113)||(34254697-34254781)
chr1 (16-113)||(39302539-39302632)
chr1 (18-113)||(4772488-4772582)
chr1 (20-113)||(37663236-37663329)
chr1 (33-113)||(8903120-8903200)
chr1 (18-102)||(49650753-49650837)
[»] scaffold0027 (2 HSPs)
scaffold0027 (33-166)||(9690-9823)
scaffold0027 (18-113)||(9573-9668)
[»] scaffold0070 (1 HSPs)
scaffold0070 (18-166)||(28849-28995)
[»] scaffold0746 (2 HSPs)
scaffold0746 (29-166)||(219-354)
scaffold0746 (18-83)||(406-471)
[»] scaffold0015 (1 HSPs)
scaffold0015 (328-370)||(52652-52694)
[»] scaffold0007 (1 HSPs)
scaffold0007 (324-358)||(249113-249147)


Alignment Details
Target: chr5 (Bit Score: 118; Significance: 4e-60; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 166 - 319
Target Start/End: Complemental strand, 20723048 - 20722896
Alignment:
Q  166 aactcctttatttcctccggttcatcatgacagaccagtgtggaagtttgaaaagaaatgtacttactcagtccgcagtgcatacagaaacatcattgat 265  Q
    ||||| |||||||||| | ||||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  20723048 aactcatttatttccttcagttcatcatgacagaccggtgtggaagtttgaaaagcaatgt-cttactcagtccgcagtgcatacagaaacatcattgat 20722950  T
Q  266 agaaactaaattgtggatcatcacggaatcgatggaaactggaatcagatttgg 319  Q
    |||||| ||||||||||||||||||||||| |||||||||||||||||||||||    
T  20722949 agaaaccaaattgtggatcatcacggaatcaatggaaactggaatcagatttgg 20722896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 18 - 166
Target Start/End: Complemental strand, 20728981 - 20728833
Alignment:
Q  18 gatgtagctgctaagttgttgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatcattctaa 117  Q
    |||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||     
T  20728981 gatgtagctgttaagttgttgactttgatcaaaacgctgcattttaaaagctccagggtgtcaaaacgttaagtttaattgtcacaaatgatcattctag 20728882  T
Q  118 cactattaatgtcgtttaatattgctagaaagacatttgttgttgtaaa 166  Q
    |||||| ||||| || |||||||||||||||||||||||||||||||||    
T  20728881 cactataaatgttgtgtaatattgctagaaagacatttgttgttgtaaa 20728833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 18 - 166
Target Start/End: Complemental strand, 19279158 - 19279010
Alignment:
Q  18 gatgtagctgctaagttgttgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatcattctaa 117  Q
    ||||||| || ||||||||| |||| ||| ||||||||||||||||||| ||||||||||||||||| |||  |||||||||||  |||||||| ||||     
T  19279158 gatgtagttgttaagttgttaacttggatcaaaacgttgcattttaaaatctccagggtgtcaaaacattacatttaatggtcataaatgatcactctag 19279059  T
Q  118 cactattaatgtcgtttaatattgctagaaagacatttgttgttgtaaa 166  Q
    |||||| |||||||||||||| |||||||||| || |||||||||||||    
T  19279058 cactataaatgtcgtttaatagtgctagaaaggcaattgttgttgtaaa 19279010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 18 - 166
Target Start/End: Original strand, 5734653 - 5734800
Alignment:
Q  18 gatgtagctgctaagttgttgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatcattctaa 117  Q
    |||||||| | |||||| ||||||||||| |||||||||  ||| |||||||||| ||||||||||||||| ||||||| ||||| |||||||||||||     
T  5734653 gatgtagccgttaagtttttgactttgatcaaaacgttgtcttt-aaaagctccaaggtgtcaaaacgttacgtttaatcgtcacaaatgatcattctag 5734751  T
Q  118 cactattaatgtcgtttaatattgctagaaagacatttgttgttgtaaa 166  Q
    || ||| |||||||||||||| |||||||||| |||||||||| |||||    
T  5734752 caatataaatgtcgtttaatagtgctagaaaggcatttgttgtcgtaaa 5734800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 33 - 166
Target Start/End: Complemental strand, 35190343 - 35190210
Alignment:
Q  33 ttgttgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatcattctaacactattaatgtcgt 132  Q
    |||||||||||||| |||| | ||| ||||||||||| ||||||||||||| |||| ||||||| ||| | ||||||||||||| |||||| ||||||||    
T  35190343 ttgttgactttgatcaaaatgctgccttttaaaagcttcagggtgtcaaaatgttacgtttaatcgtcgcaaatgatcattctaccactataaatgtcgt 35190244  T
Q  133 ttaatattgctagaaagacatttgttgttgtaaa 166  Q
    |||||| |||| |||| | |||||||||||||||    
T  35190243 ttaatagtgcttgaaacatatttgttgttgtaaa 35190210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 18 - 166
Target Start/End: Complemental strand, 36418334 - 36418186
Alignment:
Q  18 gatgtagctgctaagttgttgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatcattctaa 117  Q
    |||||||| | ||||||||||||||  || |||||||||  ||||||||||||| | | |||||||| ||| ||||||| ||||| |||||||||||||     
T  36418334 gatgtagccgttaagttgttgacttgaatcaaaacgttgtcttttaaaagctccggtgagtcaaaacattacgtttaatcgtcacaaatgatcattctag 36418235  T
Q  118 cactattaatgtcgtttaatattgctagaaagacatttgttgttgtaaa 166  Q
     | ||| |||||||||||||| |||||||||||||||| ||||||||||    
T  36418234 tattataaatgtcgtttaatagtgctagaaagacatttattgttgtaaa 36418186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 19 - 166
Target Start/End: Original strand, 1722682 - 1722828
Alignment:
Q  19 atgtagctgctaagttgttgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatcattctaac 118  Q
    ||||||| | ||| |||||||||| ||| |||||| ||| ||||||||||| ||||||||||||| ||||  || |||| |||| ||| |||||| || |    
T  1722682 atgtagccgttaaattgttgacttggatcaaaacgctgccttttaaaagcttcagggtgtcaaaatgttacattcaatgatcacaaat-atcattttatc 1722780  T
Q  119 actattaatgtcgtttaatattgctagaaagacatttgttgttgtaaa 166  Q
    ||||| |||||||||||||| |||||||||||||||||||||||||||    
T  1722781 actataaatgtcgtttaatagtgctagaaagacatttgttgttgtaaa 1722828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 29 - 166
Target Start/End: Original strand, 26275689 - 26275826
Alignment:
Q  29 taagttgttgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatcattctaacactattaatg 128  Q
    ||||||||| |||| ||| |||| | ||| |||||||||||| ||| |||||||| |||| ||| | ||||||| ||||||||||||| |||||| ||||    
T  26275689 taagttgttaacttagatcaaaatgatgccttttaaaagctctaggatgtcaaaaagttacgttcagtggtcacaaatgatcattctagcactataaatg 26275788  T
Q  129 tcgtttaatattgctagaaagacatttgttgttgtaaa 166  Q
     |||| |||| ||||||||||| |||||| ||||||||    
T  26275789 acgttcaatagtgctagaaagaaatttgtcgttgtaaa 26275826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 29 - 166
Target Start/End: Original strand, 30737939 - 30738075
Alignment:
Q  29 taagttgttgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatcattctaacactattaatg 128  Q
    |||||||||||||| ||| ||||   ||  |||||||||| ||| |||||||||| |||| ||||||| ||||| |||||||||||||||||||| ||||    
T  30737939 taagttgttgacttggatcaaaatactgttttttaaaagccccaaggtgtcaaaatgttacgtttaatcgtcacaaatgatcattctaacactataaatg 30738038  T
Q  129 tcgtttaatattgctagaaagacatttgttgttgtaaa 166  Q
    | |||||||| ||| | |||||| ||||||||||||||    
T  30738039 ttgtttaatagtgccaaaaagac-tttgttgttgtaaa 30738075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 29 - 159
Target Start/End: Original strand, 38405235 - 38405366
Alignment:
Q  29 taagttgttgactttgattaaaacgttgcattttaaaa-gctccagggtgtcaaaacgttaagtttaatggtcacgaatgatcattctaacactattaat 127  Q
    |||||| ||||||| ||| |||||| |||||||||||| ||| || ||||||||||  ||| || |||||||||| ||||||||| | | |||||| |||    
T  38405235 taagttattgacttggatcaaaacgctgcattttaaaaagcttcaaggtgtcaaaatattacgtgtaatggtcacaaatgatcatcccagcactataaat 38405334  T
Q  128 gtcgtttaatattgctagaaagacatttgttg 159  Q
     |||||||||| ||||||||||||||||||||    
T  38405335 atcgtttaataatgctagaaagacatttgttg 38405366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 29 - 166
Target Start/End: Complemental strand, 13543527 - 13543392
Alignment:
Q  29 taagttgttgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatcattctaacactattaatg 128  Q
    |||||||||||||| ||| |||| ||||  ||||||||||| || ||| ||||||| ||| ||||||||||||  ||| ||||||||| |||||| ||||    
T  13543527 taagttgttgacttggatcaaaatgttgtcttttaaaagcttcaaggtatcaaaacattacgtttaatggtcaaaaat-atcattctagcactataaatg 13543429  T
Q  129 tcgtttaatattgctagaaagacatttgttgttgtaaa 166  Q
    |||||||||| ||| | | |||||||||||||||||||    
T  13543428 tcgtttaatagtgc-atagagacatttgttgttgtaaa 13543392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 321 - 378
Target Start/End: Complemental strand, 20722634 - 20722577
Alignment:
Q  321 acgcttatgtggagtatttggaaaaacagaaataacaagatttggaatgatgtctctg 378  Q
    |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  20722634 acgcttatgtggaggatttgggaaaacagaaataacaagatttggaatgatgtctctg 20722577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 76 - 166
Target Start/End: Original strand, 18320950 - 18321040
Alignment:
Q  76 tgtcaaaacgttaagtttaatggtcacgaatgatcattctaacactattaatgtcgtttaatattgctagaaagacatttgttgttgtaaa 166  Q
    |||||||||||||  |||||| ||||  ||||||||||||| |||| | ||||  |||||||| |||||||||||||||||||||||||||    
T  18320950 tgtcaaaacgttatatttaatcgtcaaaaatgatcattctagcactttaaatgctgtttaataatgctagaaagacatttgttgttgtaaa 18321040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 29 - 102
Target Start/End: Original strand, 13543285 - 13543358
Alignment:
Q  29 taagttgttgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcac 102  Q
    |||||||||||||| ||| |||||||||| ||||||||| | ||||||||||||||| || |||||||||||||    
T  13543285 taagttgttgacttggatcaaaacgttgccttttaaaagtttcagggtgtcaaaacgctacgtttaatggtcac 13543358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 29 - 113
Target Start/End: Original strand, 35190103 - 35190187
Alignment:
Q  29 taagttgttgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatcatt 113  Q
    |||||||||||||| ||| |||| ||||| ||| |||||||| |||||||| ||||| || ||||||||||||| ||||||||||    
T  35190103 taagttgttgacttggatcaaaatgttgcctttcaaaagctctagggtgtccaaacgctacgtttaatggtcacaaatgatcatt 35190187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 18 - 113
Target Start/End: Original strand, 18249146 - 18249241
Alignment:
Q  18 gatgtagctgctaagttgttgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatcatt 113  Q
    |||||||| | | ||||||||| || ||| |||| | |||||||||||||||| |||||||||||||||||  |||||| ||||| ||||||||||    
T  18249146 gatgtagccgttgagttgttgatttggatcaaaatgctgcattttaaaagctctagggtgtcaaaacgttacatttaatagtcacaaatgatcatt 18249241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 29 - 113
Target Start/End: Original strand, 19278903 - 19278987
Alignment:
Q  29 taagttgttgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatcatt 113  Q
    |||||||||||||| ||| |||||||||  ||||||||| |||||| |||||||||| || |||||||  |||| ||||||||||    
T  19278903 taagttgttgacttggatcaaaacgttgtcttttaaaagttccaggatgtcaaaacgctacgtttaattatcacaaatgatcatt 19278987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 37 - 113
Target Start/End: Original strand, 20728734 - 20728810
Alignment:
Q  37 tgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatcatt 113  Q
    |||||| ||| |||||| ||  ||||||||||||||| ||||||||||  || ||||||||||||| ||||||||||    
T  20728734 tgacttggatcaaaacgctgtcttttaaaagctccagagtgtcaaaacactatgtttaatggtcacaaatgatcatt 20728810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 29 - 113
Target Start/End: Complemental strand, 38405479 - 38405396
Alignment:
Q  29 taagttgttgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatcatt 113  Q
    ||||||||| |||| ||| |||| |||| |||||||||||||||  |||| ||||||||| ||||||||| ||| ||||||||||    
T  38405479 taagttgttaacttggatcaaaatgttgtattttaaaagctcca-tgtgttaaaacgttacgtttaatgggcacaaatgatcatt 38405396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 113
Target Start/End: Original strand, 18238082 - 18238124
Alignment:
Q  71 cagggtgtcaaaacgttaagtttaatggtcacgaatgatcatt 113  Q
    |||||||||||||||||| |||||||| |||| ||||||||||    
T  18238082 cagggtgtcaaaacgttacgtttaatgatcacaaatgatcatt 18238124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 110
Target Start/End: Complemental strand, 26275925 - 26275852
Alignment:
Q  37 tgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatc 110  Q
    |||||| ||| |||| | ||| |||||||||||| |  ||||||||||| || ||||||||||||| |||||||    
T  26275925 tgacttggatcaaaatgctgccttttaaaagctctatagtgtcaaaacggtacgtttaatggtcacaaatgatc 26275852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 93; Significance: 3e-45; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 18 - 166
Target Start/End: Complemental strand, 30576605 - 30576457
Alignment:
Q  18 gatgtagctgctaagttgttgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatcattctaa 117  Q
    |||||||| | |||||||||||||| ||| ||||| |||| |||||||||||||||||||||||||||||| ||||||| |||||  ||||||||||||     
T  30576605 gatgtagccgttaagttgttgacttggatcaaaacattgccttttaaaagctccagggtgtcaaaacgttacgtttaatcgtcacagatgatcattctag 30576506  T
Q  118 cactattaatgtcgtttaatattgctagaaagacatttgttgttgtaaa 166  Q
    |||||| |||||||||||||| ||||| |||||||||||||||||||||    
T  30576505 cactataaatgtcgtttaatagtgctataaagacatttgttgttgtaaa 30576457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 18 - 166
Target Start/End: Original strand, 6235917 - 6236065
Alignment:
Q  18 gatgtagctgctaagttgttgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatcattctaa 117  Q
    |||||||||  |||||||||||||| ||| ||||||||||||||||||||||| ||||| |||||| |||| ||||||||||||| |||||||||||||     
T  6235917 gatgtagctattaagttgttgacttggatcaaaacgttgcattttaaaagctctagggtatcaaaatgttacgtttaatggtcacaaatgatcattctag 6236016  T
Q  118 cactattaatgtcgtttaatattgctagaaagacatttgttgttgtaaa 166  Q
    || ||| |||||| ||||||| |||||||||| ||||||||||||||||    
T  6236017 cattataaatgtcatttaatagtgctagaaaggcatttgttgttgtaaa 6236065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 20 - 167
Target Start/End: Complemental strand, 16197479 - 16197332
Alignment:
Q  20 tgtagctgctaagttgttgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatcattctaaca 119  Q
    ||||| || |||||||||||||| ||| |||||||||| ||||||||| | || ||||||||||||||| ||||||||||||| ||||||||||||| ||    
T  16197479 tgtagttgttaagttgttgacttagatcaaaacgttgccttttaaaagtttcaaggtgtcaaaacgttacgtttaatggtcacaaatgatcattctagca 16197380  T
Q  120 ctattaatgtcgtttaatattgctagaaagacatttgttgttgtaaaa 167  Q
    |||| |||||||||||||| |||||||||  ||||| |||||||||||    
T  16197379 ctataaatgtcgtttaatagtgctagaaatgcatttattgttgtaaaa 16197332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 18 - 128
Target Start/End: Original strand, 14871100 - 14871210
Alignment:
Q  18 gatgtagctgctaagttgttgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatcattctaa 117  Q
    |||| ||||| |||||||||||||| ||| ||||||||| |||||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||     
T  14871100 gatgcagctgttaagttgttgacttggatcaaaacgttggattttaaaagcttcagggtgtcaaaacgttacgtttaatggtcacaaatgatcattctag 14871199  T
Q  118 cactattaatg 128  Q
    |||||| ||||    
T  14871200 cactatgaatg 14871210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 48 - 166
Target Start/End: Original strand, 44040979 - 44041097
Alignment:
Q  48 aaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatcattctaacactattaatgtcgtttaatattgctagaa 147  Q
    |||||||||| |||||||||||||| |||||||||| ||||  ||||||||| || |||  |||||||| |||||| |||||||||||||| ||||||||    
T  44040979 aaaacgttgccttttaaaagctccaaggtgtcaaaatgttacatttaatggtgacaaatagtcattctagcactataaatgtcgtttaatagtgctagaa 44041078  T
Q  148 agacatttgttgttgtaaa 166  Q
    |||||||||||| ||||||    
T  44041079 agacatttgttgctgtaaa 44041097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 18 - 166
Target Start/End: Complemental strand, 8714298 - 8714151
Alignment:
Q  18 gatgtagctgctaagttgttgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatcattctaa 117  Q
    |||||||| | |||||| ||||||| ||| |||||| ||| ||||||||||||||||||  |||||||||| ||||||||||||  ||| |||||||||     
T  8714298 gatgtagccgttaagttattgacttggatcaaaacgctgccttttaaaagctccagggtcacaaaacgttacgtttaatggtcaaaaat-atcattctag 8714200  T
Q  118 cactattaatgtcgtttaatattgctagaaagacatttgttgttgtaaa 166  Q
    || ||| |||||||||||||| ||| | ||| |||||||||||||||||    
T  8714199 cattataaatgtcgtttaatagtgccataaaaacatttgttgttgtaaa 8714151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 29 - 166
Target Start/End: Complemental strand, 39701327 - 39701189
Alignment:
Q  29 taagttgttgactttgattaaaacgttgcattttaaaagctcca-gggtgtcaaaacgttaagtttaatggtcacgaatgatcattctaacactattaat 127  Q
    |||||||||||||| ||| |||| | ||  |||||||||||| | ||||||||||| |||| ||||||| ||||| ||| ||||||||| |||||| |||    
T  39701327 taagttgttgacttggatcaaaatgctgtcttttaaaagctctaagggtgtcaaaatgttacgtttaatcgtcacaaattatcattctagcactataaat 39701228  T
Q  128 gtcgtttaatattgctagaaagacatttgttgttgtaaa 166  Q
    ||||||||||| |||||||||| ||||| ||||||||||    
T  39701227 gtcgtttaatagtgctagaaaggcatttattgttgtaaa 39701189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 29 - 166
Target Start/End: Complemental strand, 9276925 - 9276788
Alignment:
Q  29 taagttgttgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatcattctaacactattaatg 128  Q
    |||||||||||||| ||  |||||| | | |||||||||||||||||||| ||||||||| |||||||  |||| |||||||||||||  ||||| |||     
T  9276925 taagttgttgacttggagcaaaacgctaccttttaaaagctccagggtgttaaaacgttacgtttaatcatcacaaatgatcattctaggactataaata 9276826  T
Q  129 tcgtttaatattgctagaaagacatttgttgttgtaaa 166  Q
    |||||||||| || ||||||| |||||||| |||||||    
T  9276825 tcgtttaatagtgttagaaaggcatttgttattgtaaa 9276788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 18 - 166
Target Start/End: Original strand, 23553542 - 23553696
Alignment:
Q  18 gatgtagctgctaagttgttgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatcattctaa 117  Q
    |||||||| | ||| |||||||||| ||| ||||||| |  |||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||     
T  23553542 gatgtagccgttaaattgttgacttggatcaaaacgtcgtcttttaaaagctccagggtgtcaaaacgttacgtttaatcgtcacaaatgatcattctag 23553641  T
Q  118 cactattaatgtcgt------ttaatattgctagaaagacatttgttgttgtaaa 166  Q
    |||||| ||  ||||      || ||| |||||||||||||||| ||||||||||    
T  23553642 cactataaacatcgtttgatgtttatagtgctagaaagacatttcttgttgtaaa 23553696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 29 - 162
Target Start/End: Original strand, 4613938 - 4614071
Alignment:
Q  29 taagttgttgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatcattctaacactattaatg 128  Q
    ||||||||||||||  || ||||  |||||||||||||| | || ||||||||||||||  ||||||| ||||| ||||||||||||| |||||  | ||    
T  4613938 taagttgttgacttgaatcaaaatattgcattttaaaagttacaaggtgtcaaaacgttgtgtttaatcgtcacaaatgatcattctagcactaaaattg 4614037  T
Q  129 tcgtttaatattgctagaaagacatttgttgttg 162  Q
    || ||||||| |||||||||  ||||||||||||    
T  4614038 tcatttaatagtgctagaaatgcatttgttgttg 4614071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 29 - 166
Target Start/End: Original strand, 25737302 - 25737437
Alignment:
Q  29 taagttgttgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatcattctaacactattaatg 128  Q
    ||||||||| | || ||| |||||| ||||||||||||| | | |||||||||||||||||||||||||||||| ||  |||| | || |||||| ||||    
T  25737302 taagttgttaaattggataaaaacgatgcattttaaaagtttc-gggtgtcaaaacgttaagtttaatggtcac-aaacatcaatttagcactataaatg 25737399  T
Q  129 tcgtttaatattgctagaaagacatttgttgttgtaaa 166  Q
    |||||||||| |||||||||   |||||||| ||||||    
T  25737400 tcgtttaatagtgctagaaatgtatttgttggtgtaaa 25737437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 29 - 114
Target Start/End: Complemental strand, 14871291 - 14871206
Alignment:
Q  29 taagttgttgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatcattc 114  Q
    |||||||||||||| ||| |||||| ||| ||||||||||| ||||||||| ||||  || ||||||||||||| |||||||||||    
T  14871291 taagttgttgacttggatcaaaacgatgccttttaaaagcttcagggtgtcgaaactctacgtttaatggtcacaaatgatcattc 14871206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 30576339 - 30576432
Alignment:
Q  18 gatgtagctgctaagttgttgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatca 111  Q
    |||||||| | ||||||||||||||  || |||| ||||| ||||||||||||  ||||||||||||  || ||||||||||||| ||||||||    
T  30576339 gatgtagccgttaagttgttgacttgaatcaaaatgttgccttttaaaagctcgggggtgtcaaaacactacgtttaatggtcacaaatgatca 30576432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 24 - 113
Target Start/End: Complemental strand, 34686837 - 34686748
Alignment:
Q  24 gctgctaagttgttgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatcatt 113  Q
    |||| ||||||| ||| || ||| |||| ||||||||||||| ||| ||||||||||||||| || ||||||||||||  ||||||||||    
T  34686837 gctgttaagttgctgatttggatcaaaatgttgcattttaaatgcttcagggtgtcaaaacgctaggtttaatggtcaaaaatgatcatt 34686748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 114
Target Start/End: Complemental strand, 5359015 - 5358919
Alignment:
Q  18 gatgtagctgctaagttgttgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatcattc 114  Q
    |||||||||  |||||||||||||||||| |||| | ||| ||||||||||||||| ||||| ||||  || ||||||| | ||| |||||||||||    
T  5359015 gatgtagcttttaagttgttgactttgatcaaaaagctgccttttaaaagctccagagtgtcgaaacactatgtttaattgccacaaatgatcattc 5358919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 29 - 113
Target Start/End: Complemental strand, 40553182 - 40553098
Alignment:
Q  29 taagttgttgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatcatt 113  Q
    ||||||||||||||  || |||| ||||  ||||||||||||||||||||||||||| ||  |||||||||||| ||| ||||||    
T  40553182 taagttgttgacttgtatcaaaatgttgtcttttaaaagctccagggtgtcaaaacgctacctttaatggtcacaaattatcatt 40553098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 101
Target Start/End: Original strand, 39701072 - 39701154
Alignment:
Q  18 gatgtagctgctaagttgttgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtca 101  Q
    |||||||| | ||||||||||||||| || |||| ||||| |||||||||||| || ||||||||||| || ||||||||||||    
T  39701072 gatgtagccgttaagttgttgacttt-atcaaaatgttgccttttaaaagctcgagtgtgtcaaaacgctacgtttaatggtca 39701154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 19 - 113
Target Start/End: Original strand, 8714034 - 8714128
Alignment:
Q  19 atgtagctgctaagttgttgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatcatt 113  Q
    ||||||| | ||||||||||||||  || |||| | | | |||||||||||||||||| |||||||  || ||||||||||||| ||||||||||    
T  8714034 atgtagccgttaagttgttgacttgaatcaaaatgctactttttaaaagctccagggtatcaaaacactacgtttaatggtcacaaatgatcatt 8714128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 29 - 113
Target Start/End: Original strand, 9276681 - 9276765
Alignment:
Q  29 taagttgttgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatcatt 113  Q
    |||||||||||||| ||| |||| | ||| ||||||||| || ||| ||||||||||||| |||||  |||||| ||||||||||    
T  9276681 taagttgttgacttggatcaaaatgatgccttttaaaagttcgaggatgtcaaaacgttatgtttagcggtcacaaatgatcatt 9276765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 22 - 113
Target Start/End: Original strand, 16197220 - 16197310
Alignment:
Q  22 tagctgctaagttgttgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatcatt 113  Q
    |||||| ||| |||||||||| ||| ||||  |||| ||||||||||| || |||||||||||| | | |||||||||||| ||||||||||    
T  16197220 tagctgttaaattgttgacttggatcaaaatattgccttttaaaagcttcaaggtgtcaaaacgctta-tttaatggtcacaaatgatcatt 16197310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 113
Target Start/End: Complemental strand, 6236172 - 6236088
Alignment:
Q  29 taagttgttgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatcatt 113  Q
    |||||||||||||| ||| |||||| ||  ||||||| | | ||||||||||||| | || ||||||||||||| || |||||||    
T  6236172 taagttgttgacttagatcaaaacgctgtcttttaaatgtttcagggtgtcaaaatgctacgtttaatggtcacaaacgatcatt 6236088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 113
Target Start/End: Complemental strand, 23553802 - 23553719
Alignment:
Q  29 taagttgttgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatcatt 113  Q
    |||||||||||||| ||| |||| | ||  |||||||||||| |||||||||||||  |  ||||||||||||| ||||||||||    
T  23553802 taagttgttgacttggatcaaaatgatgt-ttttaaaagctcgagggtgtcaaaacacttcgtttaatggtcacaaatgatcatt 23553719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 44041233 - 44041154
Alignment:
Q  18 gatgtagctgctaagttgttgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatg 97  Q
    |||||| ||| ||||| |||||||| ||| |||| | | | ||||||||||| ||||||||||||||| || ||||||||    
T  44041233 gatgtaactgttaagtagttgacttggatcaaaatgctaccttttaaaagcttcagggtgtcaaaacgctacgtttaatg 44041154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 166
Target Start/End: Original strand, 40553034 - 40553075
Alignment:
Q  125 aatgtcgtttaatattgctagaaagacatttgttgttgtaaa 166  Q
    |||||| ||||||| |||||||||| ||||||||||||||||    
T  40553034 aatgtcatttaatagtgctagaaaggcatttgttgttgtaaa 40553075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 85; Significance: 2e-40; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 30 - 166
Target Start/End: Complemental strand, 33235476 - 33235340
Alignment:
Q  30 aagttgttgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatcattctaacactattaatgt 129  Q
    ||||||||||||| ||| |||| || |||||||||||||| ||||||| ||||| |||| ||||||||||||| ||||||||||||| |||||| |||||    
T  33235476 aagttgttgacttggatcaaaatgtcgcattttaaaagcttcagggtgccaaaatgttacgtttaatggtcacaaatgatcattctagcactataaatgt 33235377  T
Q  130 cgtttaatattgctagaaagacatttgttgttgtaaa 166  Q
    | ||||||| |||||||||||||||||||||||||||    
T  33235376 catttaatagtgctagaaagacatttgttgttgtaaa 33235340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 29 - 166
Target Start/End: Complemental strand, 8040086 - 8039950
Alignment:
Q  29 taagttgttgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatcattctaacactattaatg 128  Q
    ||||||||||||||||||||||||| ||| |||||||||||||||| |||||||| |||| ||||||||||||  ||| |||||| || |||||| |||     
T  8040086 taagttgttgactttgattaaaacgctgccttttaaaagctccaggatgtcaaaatgttatgtttaatggtcataaat-atcattttagcactataaata 8039988  T
Q  129 tcgtttaatattgctagaaagacatttgttgttgtaaa 166  Q
    |||||||||| ||||| |||||||||||||||||||||    
T  8039987 tcgtttaataatgctataaagacatttgttgttgtaaa 8039950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 19 - 166
Target Start/End: Original strand, 42990689 - 42990836
Alignment:
Q  19 atgtagctgctaagttgttgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatcattctaac 118  Q
    ||||||| | |||||||||||||| ||| |||||| ||| ||||||||| |  |||||||||||| |||| ||||||| |||||  ||||||||| || |    
T  42990689 atgtagccgttaagttgttgacttggatcaaaacgctgccttttaaaagttatagggtgtcaaaatgttacgtttaatcgtcacagatgatcattatagc 42990788  T
Q  119 actattaatgtcgtttaatattgctagaaagacatttgttgttgtaaa 166  Q
    | ||| |||||||||||||| |||||||||||||||||||||||||||    
T  42990789 attataaatgtcgtttaatagtgctagaaagacatttgttgttgtaaa 42990836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 29 - 167
Target Start/End: Original strand, 5559308 - 5559445
Alignment:
Q  29 taagttgttgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatcattctaacactattaatg 128  Q
    |||||||||||||| ||| ||||||  || |||||||| ||||||||||||||||||||| | ||||||||||| ||| ||||||||| || ||| ||||    
T  5559308 taagttgttgacttggatcaaaacgccgccttttaaaatctccagggtgtcaaaacgttacggttaatggtcacaaat-atcattctagcattataaatg 5559406  T
Q  129 tcgtttaatattgctagaaagacatttgttgttgtaaaa 167  Q
    | |||||||  |||||||||  |||||||||||||||||    
T  5559407 ttgtttaattgtgctagaaatgcatttgttgttgtaaaa 5559445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 29 - 166
Target Start/End: Complemental strand, 5805479 - 5805344
Alignment:
Q  29 taagttgttgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatcattctaacactattaatg 128  Q
    |||||||||||||| ||| |||||| ||  ||||||||| || ||||||||||||| ||| || |||| ||||| |||||||||||||||||||| ||      
T  5805479 taagttgttgacttggatcaaaacgctgtcttttaaaagttctagggtgtcaaaactttacgtgtaatcgtcacaaatgatcattctaacactataaa-- 5805382  T
Q  129 tcgtttaatattgctagaaagacatttgttgttgtaaa 166  Q
    || ||||||| ||||||||||||||||||| |||||||    
T  5805381 tcatttaatagtgctagaaagacatttgttattgtaaa 5805344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 33 - 166
Target Start/End: Original strand, 1441160 - 1441292
Alignment:
Q  33 ttgttgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatcattctaacactattaatgtcgt 132  Q
    ||||| |||| ||| |||||| ||||||||||||| ||   ||||||||||||||| ||||||||||||| ||| |||||| || |||||| ||||||||    
T  1441160 ttgttaacttggatcaaaacgctgcattttaaaagttctgcggtgtcaaaacgttatgtttaatggtcacaaat-atcattttagcactataaatgtcgt 1441258  T
Q  133 ttaatattgctagaaagacatttgttgttgtaaa 166  Q
    |||||| || || |||||||||||||||||||||    
T  1441259 ttaataatggtaaaaagacatttgttgttgtaaa 1441292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 29 - 166
Target Start/End: Original strand, 27995260 - 27995396
Alignment:
Q  29 taagttgttgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatcattctaacactattaatg 128  Q
    |||||||||||||||||| |||| | | | | ||||||||| ||||||||||||| |||| ||||||||||||| ||| |||||| || |||||| ||||    
T  27995260 taagttgttgactttgatcaaaatgcttcctattaaaagcttcagggtgtcaaaatgttacgtttaatggtcacaaat-atcattttagcactataaatg 27995358  T
Q  129 tcgtttaatattgctagaaagacatttgttgttgtaaa 166  Q
    |||||||||| |||||||||| | || |||||||||||    
T  27995359 tcgtttaatagtgctagaaaggctttcgttgttgtaaa 27995396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 29 - 166
Target Start/End: Complemental strand, 39959119 - 39958983
Alignment:
Q  29 taagttgttgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatcattctaacactattaatg 128  Q
    |||||||||||||| ||| |||||| ||| || || ||| | |||| ||||||||||||| ||||||||||||| ||| |||||| || |||||| ||||    
T  39959119 taagttgttgacttggatcaaaacgctgccttgtagaagtttcaggatgtcaaaacgttacgtttaatggtcacaaat-atcattgtagcactataaatg 39959021  T
Q  129 tcgtttaatattgctagaaagacatttgttgttgtaaa 166  Q
    | |||||||| |||||||||||||||||||| ||||||    
T  39959020 ttgtttaatagtgctagaaagacatttgttggtgtaaa 39958983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 18 - 166
Target Start/End: Complemental strand, 35215260 - 35215112
Alignment:
Q  18 gatgtagctgctaagttgttgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatcattctaa 117  Q
    |||||||| | ||||||||| || | ||| ||| |||||| ||||||||||| || |||||||||| |||| ||||||| ||||| |||||| |||||||    
T  35215260 gatgtagccgttaagttgttaacatggatcaaagcgttgccttttaaaagcttcaaggtgtcaaaatgttacgtttaatcgtcacaaatgataattctaa 35215161  T
Q  118 cactattaatgtcgtttaatattgctagaaagacatttgttgttgtaaa 166  Q
    |||||  | |||| ||||||| |||||||||||||||| | ||||||||    
T  35215160 cactacaagtgtcatttaatagtgctagaaagacatttatggttgtaaa 35215112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 59 - 166
Target Start/End: Complemental strand, 20184178 - 20184072
Alignment:
Q  59 ttttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatcattctaacactattaatgtcgtttaatattgctagaaagacatttgtt 158  Q
    ||||||||||| || |||||||||||||||  |||||||||| | ||||||||||||| ||| || |||||| ||||||| ||||||||||||| |||||    
T  20184178 ttttaaaagcttcaaggtgtcaaaacgttacatttaatggtcgcaaatgatcattctagcacaataaatgtcttttaataatgctagaaagaca-ttgtt 20184080  T
Q  159 gttgtaaa 166  Q
    ||||||||    
T  20184079 gttgtaaa 20184072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 18 - 96
Target Start/End: Original strand, 5075471 - 5075549
Alignment:
Q  18 gatgtagctgctaagttgttgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaat 96  Q
    |||||||| | |||||||||||||| ||| |||||| |||||||||||||||| ||||||||||||||||| |||||||    
T  5075471 gatgtagccgttaagttgttgacttggatcaaaacgctgcattttaaaagctcgagggtgtcaaaacgttacgtttaat 5075549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 18 - 128
Target Start/End: Original strand, 28256682 - 28256791
Alignment:
Q  18 gatgtagctgctaagttgttgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatcattctaa 117  Q
    |||||||| | |||||||||||||| ||| |||||| ||| |||||||| ||| ||||||||||||||||| ||||||||||||| ||| |||||| ||     
T  28256682 gatgtagcagttaagttgttgacttggatcaaaacgctgccttttaaaaactctagggtgtcaaaacgttacgtttaatggtcacaaat-atcattttag 28256780  T
Q  118 cactattaatg 128  Q
    |||||| ||||    
T  28256781 cactataaatg 28256791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 36 - 113
Target Start/End: Original strand, 1348847 - 1348924
Alignment:
Q  36 ttgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatcatt 113  Q
    ||||||| ||| |||| ||||| |||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||    
T  1348847 ttgacttggatcaaaatgttgccttttaaaagctccagggtgtcataacgttacgtttaatggtcacaaatgatcatt 1348924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 29 - 113
Target Start/End: Complemental strand, 5559553 - 5559469
Alignment:
Q  29 taagttgttgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatcatt 113  Q
    ||||||||||| |||||| |||| | ||| ||||||||||||||||||||||||||| || ||||||||||||| ||| ||||||    
T  5559553 taagttgttgagtttgatcaaaatgctgccttttaaaagctccagggtgtcaaaacgctacgtttaatggtcacaaataatcatt 5559469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 29 - 113
Target Start/End: Original strand, 5805237 - 5805321
Alignment:
Q  29 taagttgttgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatcatt 113  Q
    |||||||||||||| ||| |||| | ||||||||||||| || |||||||||||||| || ||||||||||||| ||||||||||    
T  5805237 taagttgttgacttggatcaaaatgctgcattttaaaagttcgagggtgtcaaaacgctatgtttaatggtcacaaatgatcatt 5805321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 113
Target Start/End: Original strand, 20183954 - 20184049
Alignment:
Q  18 gatgtagctgctaagttgttgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatcatt 113  Q
    ||||||| || |||||||||||||| ||| |||||||||  |||||||||||  |||||||||||||  || ||||||||||||| ||||||||||    
T  20183954 gatgtagttgttaagttgttgacttggatcaaaacgttgtcttttaaaagcttgagggtgtcaaaaccctacgtttaatggtcacaaatgatcatt 20184049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 29 - 166
Target Start/End: Complemental strand, 1349074 - 1348947
Alignment:
Q  29 taagttgttgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatcattctaacactattaatg 128  Q
    |||||||||||||||||| |||||| ||| ||||||||| | ||| |||||||||||||| ||||          |||||||| |||| || ||| ||||    
T  1349074 taagttgttgactttgatcaaaacgctgccttttaaaagtttcagagtgtcaaaacgttacgttt----------aatgatcactctagcaatataaatg 1348985  T
Q  129 tcgtttaatattgctagaaagacatttgttgttgtaaa 166  Q
    |||||||||| |||||||||||||||| ||||| ||||    
T  1348984 tcgtttaatagtgctagaaagacatttattgttttaaa 1348947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 18 - 113
Target Start/End: Original strand, 1286556 - 1286651
Alignment:
Q  18 gatgtagctgctaagttgttgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatcatt 113  Q
    |||||||| | |||||||||||||| |||  ||||  | | ||||||||||||||||||||||||||| || ||||||||||||| |||| |||||    
T  1286556 gatgtagccgttaagttgttgacttggatccaaacactactttttaaaagctccagggtgtcaaaacgctatgtttaatggtcacaaatgttcatt 1286651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 49 - 166
Target Start/End: Original strand, 29590796 - 29590912
Alignment:
Q  49 aaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatcattctaacactattaatgtcgtttaatattgctagaaa 148  Q
    |||| |||| ||||||||| |  ||||||||||||  ||| ||||||| ||||  ||| |||||| |  |||||| |||||| ||||||| |||||||||    
T  29590796 aaacattgccttttaaaagttttagggtgtcaaaagattacgtttaatagtcataaat-atcattttggcactataaatgtcatttaatagtgctagaaa 29590894  T
Q  149 gacatttgttgttgtaaa 166  Q
    ||||||||||||||||||    
T  29590895 gacatttgttgttgtaaa 29590912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 18 - 113
Target Start/End: Original strand, 8039834 - 8039927
Alignment:
Q  18 gatgtagctgctaagttgttgactttgattaaaacgttgcattttaaaagctc-cagggtgtcaaaacgttaagtttaatggtcacgaatgatcatt 113  Q
    |||||||| | |||||||||||||||||| |||| | ||| |||||||||||| ||||||||||||||| || |||   ||||||| ||||||||||    
T  8039834 gatgtagccgttaagttgttgactttgatcaaaatgctgccttttaaaagctcgcagggtgtcaaaacgctacgtt---tggtcacaaatgatcatt 8039927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 29 - 113
Target Start/End: Original strand, 20366246 - 20366330
Alignment:
Q  29 taagttgttgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatcatt 113  Q
    ||||||||||| |||||| |||| ||||| ||||||||| | |||||| |||||||  || ||||||||||||| ||| ||||||    
T  20366246 taagttgttgattttgatcaaaatgttgccttttaaaagtttcagggtatcaaaacactacgtttaatggtcacaaattatcatt 20366330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 29 - 113
Target Start/End: Complemental strand, 27995502 - 27995419
Alignment:
Q  29 taagttgttgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatcatt 113  Q
    |||||||||||||| ||| |||| ||||| ||||||||| | |||| |||||||||| || |||||||||||||  |||||||||    
T  27995502 taagttgttgacttggatcaaaatgttgccttttaaaaggttcagg-tgtcaaaacgctacgtttaatggtcacatatgatcatt 27995419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 29 - 113
Target Start/End: Original strand, 39958877 - 39958960
Alignment:
Q  29 taagttgttgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatcatt 113  Q
    |||||||||||||||||| ||||  |||| |||||| |||||| | ||||||||  |||| ||||||||||||| ||||||||||    
T  39958877 taagttgttgactttgatcaaaatattgccttttaagagctcc-gtgtgtcaaagtgttacgtttaatggtcacaaatgatcatt 39958960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 113
Target Start/End: Complemental strand, 10620144 - 10620092
Alignment:
Q  61 ttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatcatt 113  Q
    ||||||| | ||||||||||||||| || ||||||||||||| ||||||||||    
T  10620144 ttaaaagtttcagggtgtcaaaacgctacgtttaatggtcacaaatgatcatt 10620092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 54 - 113
Target Start/End: Original strand, 33235258 - 33235317
Alignment:
Q  54 ttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatcatt 113  Q
    |||| ||||||||| || |||||||||||| | || ||||||||||||| ||||||||||    
T  33235258 ttgccttttaaaagttctagggtgtcaaaatgctacgtttaatggtcacaaatgatcatt 33235317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 18 - 113
Target Start/End: Original strand, 35214995 - 35215089
Alignment:
Q  18 gatgtagctgctaagttgttgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatcatt 113  Q
    |||||||| | | |||||||||||| ||| |||| | ||| |||||||||||| ||||||||||||   || ||||| ||||||| ||||||||||    
T  35214995 gatgtagccgtttagttgttgacttggatcaaaatgctgc-ttttaaaagctcgagggtgtcaaaatcctacgtttattggtcacaaatgatcatt 35215089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 113
Target Start/End: Complemental strand, 28256842 - 28256788
Alignment:
Q  59 ttttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatcatt 113  Q
    |||||||||||| ||||||||||||   || ||||||||||||| ||||||||||    
T  28256842 ttttaaaagctctagggtgtcaaaattctacgtttaatggtcacaaatgatcatt 28256788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 10619988 - 10620052
Alignment:
Q  18 gatgtagctgctaagttgttgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaa 83  Q
    |||||| ||| |||||||||||||| ||| |||| ||||| |||||||| ||||||| ||||||||    
T  10619988 gatgtatctgttaagttgttgacttggatcaaaatgttgc-ttttaaaaactccaggctgtcaaaa 10620052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 94
Target Start/End: Complemental strand, 31175879 - 31175814
Alignment:
Q  29 taagttgttgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaacgttaagttta 94  Q
    |||||||||||||| ||| |||| | | |||||||||||||| ||| ||||||||| ||| |||||    
T  31175879 taagttgttgacttggatgaaaatgcttcattttaaaagctcgaggatgtcaaaaccttatgttta 31175814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 82; Significance: 1e-38; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 29 - 166
Target Start/End: Original strand, 17179823 - 17179959
Alignment:
Q  29 taagttgttgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatcattctaacactattaatg 128  Q
    |||||||||||||| ||| |||  ||| | |||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||| |||||| ||||    
T  17179823 taagttgttgacttagatcaaat-gttaccttttaaaagctccagggtgtcaaaacgttacgcttaatggtcacaaatgatcattctagcactataaatg 17179921  T
Q  129 tcgtttaatattgctagaaagacatttgttgttgtaaa 166  Q
    |||||||||| ||||||||||||||||||||| |||||    
T  17179922 tcgtttaatagtgctagaaagacatttgttgtggtaaa 17179959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 29 - 166
Target Start/End: Original strand, 9902098 - 9902235
Alignment:
Q  29 taagttgttgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatcattctaacactattaatg 128  Q
    |||||||||||||| ||| |||||| ||| ||||||||||| ||  |||| ||||||||| ||||||| ||||| || |||||||||| |||||| ||||    
T  9902098 taagttgttgacttggatcaaaacgctgccttttaaaagcttcaaagtgttaaaacgttacgtttaatcgtcacaaacgatcattctagcactataaatg 9902197  T
Q  129 tcgtttaatattgctagaaagacatttgttgttgtaaa 166  Q
    |||||||||| || ||||||| ||||| ||||||||||    
T  9902198 tcgtttaatagtgatagaaaggcatttattgttgtaaa 9902235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 49 - 166
Target Start/End: Complemental strand, 17132124 - 17132007
Alignment:
Q  49 aaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatcattctaacactattaatgtcgtttaatattgctagaaa 148  Q
    |||| |||| ||||||||| |||||||||||||||  |||  ||||||||| || ||||||||||||| |||| | |||||||||||||| |||||||||    
T  17132124 aaacattgccttttaaaagttccagggtgtcaaaatattacatttaatggttacaaatgatcattctagcactgtaaatgtcgtttaatagtgctagaaa 17132025  T
Q  149 gacatttgttgttgtaaa 166  Q
    ||||||||||||||||||    
T  17132024 gacatttgttgttgtaaa 17132007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 18 - 166
Target Start/End: Original strand, 24139178 - 24139327
Alignment:
Q  18 gatgtagctgctaa-gttgttgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatcattcta 116  Q
    |||||||||| ||| ||||||||||| ||| ||||||||| |||||||||| || ||| | | ||||||||| ||||||||||||| ||| |||||| ||    
T  24139178 gatgtagctgttaaagttgttgacttagatcaaaacgttgtattttaaaagttctaggatattaaaacgttatgtttaatggtcacaaattatcatttta 24139277  T
Q  117 acactattaatgtcgtttaatattgctagaaagacatttgttgttgtaaa 166  Q
     ||| || ||||   ||||||| |||||||||||||||||||||||||||    
T  24139278 gcaccataaatgctatttaatagtgctagaaagacatttgttgttgtaaa 24139327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 46 - 160
Target Start/End: Complemental strand, 10963161 - 10963047
Alignment:
Q  46 ttaaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatcattctaacactattaatgtcgtttaatattgctag 145  Q
    |||||| ||||| ||||||||| |  ||| |||||||||| || ||||||| ||||| ||||||||||||| |||||| ||||||||||||||  || ||    
T  10963161 ttaaaatgttgctttttaaaagttttaggatgtcaaaacgatacgtttaatcgtcacaaatgatcattctagcactataaatgtcgtttaatagagcaag 10963062  T
Q  146 aaagacatttgttgt 160  Q
    ||||||| |||||||    
T  10963061 aaagacagttgttgt 10963047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 31 - 166
Target Start/End: Complemental strand, 11527968 - 11527833
Alignment:
Q  31 agttgttgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatca-ttctaacactattaatgt 129  Q
    |||||||||||| ||| |||||  ||  ||||||||| |||||||||||||||||||| ||||||||||||| ||| |||| || || |||||| |||||    
T  11527968 agttgttgacttggatcaaaacactgtcttttaaaagttccagggtgtcaaaacgttatgtttaatggtcacaaat-atcatttttaccactataaatgt 11527870  T
Q  130 cgtttaatattgctagaaagacatttgttgttgtaaa 166  Q
    |||| |||  || |||||||||||||  |||||||||    
T  11527869 cgttcaattgtgttagaaagacattttatgttgtaaa 11527833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 29 - 166
Target Start/End: Original strand, 28630319 - 28630444
Alignment:
Q  29 taagttgttgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatcattctaacactattaatg 128  Q
    |||||||||||||| |||||||| |||   ||||||||||| | ||||||||||| |||| ||||||||||||| |||         | |||||| ||||    
T  28630319 taagttgttgacttggattaaaatgtt---ttttaaaagcttcggggtgtcaaaatgttacgtttaatggtcacaaat---------atcactataaatg 28630406  T
Q  129 tcgtttaatattgctagaaagacatttgttgttgtaaa 166  Q
    | |||||||| |||||||||||||||||||||||||||    
T  28630407 ttgtttaatagtgctagaaagacatttgttgttgtaaa 28630444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 113
Target Start/End: Original strand, 10962926 - 10963021
Alignment:
Q  18 gatgtagctgctaagttgttgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatcatt 113  Q
    |||||||| | |||||||||||||| ||| |||| | ||  |||||||||||  ||| |||||||||| || ||||||||||||| ||||||||||    
T  10962926 gatgtagccgttaagttgttgacttggatcaaaatgctgttttttaaaagctttaggatgtcaaaacgctacgtttaatggtcacaaatgatcatt 10963021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 29 - 113
Target Start/End: Complemental strand, 28630551 - 28630467
Alignment:
Q  29 taagttgttgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatcatt 113  Q
    |||||||||||||| ||| |||| | ||| ||||||||| | |||||||||||||||  | ||||||| ||||| ||||||||||    
T  28630551 taagttgttgacttggatcaaaatgctgccttttaaaagttacagggtgtcaaaacgccatgtttaatagtcacaaatgatcatt 28630467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 128
Target Start/End: Complemental strand, 2839997 - 2839887
Alignment:
Q  18 gatgtagctgctaagttgttgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatcattctaa 117  Q
    |||||||| | ||||| ||||| || ||| |||||| ||  ||||||||||| |||||||| | ||||||| |||||||||| || ||||||| ||| |     
T  2839997 gatgtagccgttaagtggttgatttggatcaaaacgctgttttttaaaagcttcagggtgttagaacgttacgtttaatggtaacaaatgatcgttccag 2839898  T
Q  118 cactattaatg 128  Q
    |||||| ||||    
T  2839897 cactataaatg 2839887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 113
Target Start/End: Original strand, 2839842 - 2839890
Alignment:
Q  65 aagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatcatt 113  Q
    ||||||||||||||||||||| ||  |||||||||||| ||||||||||    
T  2839842 aagctccagggtgtcaaaacgctacatttaatggtcacaaatgatcatt 2839890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 85
Target Start/End: Complemental strand, 9946640 - 9946584
Alignment:
Q  29 taagttgttgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaacg 85  Q
    ||||||||| |||| ||| | || ||||||||||||||||| |||||||||||||||    
T  9946640 taagttgttaacttggatcagaatgttgcattttaaaagcttcagggtgtcaaaacg 9946584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 29 - 112
Target Start/End: Complemental strand, 10407667 - 10407584
Alignment:
Q  29 taagttgttgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatcat 112  Q
    ||||||||||| || ||  |||| ||||| |||||||  ||||||||||||||||||    ||||||||||||| |||||||||    
T  10407667 taagttgttgaattggaacaaaatgttgcgttttaaagtctccagggtgtcaaaacgacgcgtttaatggtcacaaatgatcat 10407584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 82
Target Start/End: Original strand, 17131740 - 17131773
Alignment:
Q  49 aaacgttgcattttaaaagctccagggtgtcaaa 82  Q
    ||||||||||||||||||| ||||||||||||||    
T  17131740 aaacgttgcattttaaaagttccagggtgtcaaa 17131773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 102
Target Start/End: Complemental strand, 24139433 - 24139361
Alignment:
Q  29 taagttgttgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcac 102  Q
    |||||||||||||| ||| |||||  | ||||||||||||| || ||||| |||||| || |||||||||||||    
T  24139433 taagttgttgacttggatcaaaacactacattttaaaagcttca-ggtgttaaaacgctacgtttaatggtcac 24139361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 109
Target Start/End: Original strand, 11527726 - 11527806
Alignment:
Q  29 taagttgttgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgat 109  Q
    ||||||||||| || ||| |||| ||| | |||||||||||  ||| |||||||||| ||  |||||||||||| ||||||    
T  11527726 taagttgttgagttggatcaaaatgttaccttttaaaagcttaaggctgtcaaaacgctacttttaatggtcacaaatgat 11527806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 82; Significance: 1e-38; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 29 - 166
Target Start/End: Original strand, 3087238 - 3087375
Alignment:
Q  29 taagttgttgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatcattctaacactattaatg 128  Q
    |||||||||||||| ||| |||||| |||||||||||| ||| | ||||||||||||||| ||||||||||||  ||||||| |||||||||||| ||||    
T  3087238 taagttgttgacttggatcaaaacgctgcattttaaaatctcaaaggtgtcaaaacgttacgtttaatggtcataaatgatcgttctaacactataaatg 3087337  T
Q  129 tcgtttaatattgctagaaagacatttgttgttgtaaa 166  Q
    |  ||||||| |||||||||||||||||||||||||||    
T  3087338 ttatttaatagtgctagaaagacatttgttgttgtaaa 3087375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 18 - 166
Target Start/End: Original strand, 31247314 - 31247462
Alignment:
Q  18 gatgtagctgctaagttgttgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatcattctaa 117  Q
    |||||||| | |||||||||||||| ||| |||||||||  ||||||||| |||| ||||||||||  ||| |||||||||| || |||||||||||||     
T  31247314 gatgtagccgttaagttgttgacttggatcaaaacgttgtcttttaaaagttccatggtgtcaaaatattacgtttaatggttacaaatgatcattctag 31247413  T
Q  118 cactattaatgtcgtttaatattgctagaaagacatttgttgttgtaaa 166  Q
    |||| | |||||||||||||| |||||||||||||||||||||||||||    
T  31247414 cactgtaaatgtcgtttaatagtgctagaaagacatttgttgttgtaaa 31247462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 29 - 166
Target Start/End: Complemental strand, 53783318 - 53783181
Alignment:
Q  29 taagttgttgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatcattctaacactattaatg 128  Q
    ||||||||||| || ||| |||||  |||||||||||||||||| ||||||||||  ||| ||||||| ||||| ||||||||||||| |||||| ||||    
T  53783318 taagttgttgatttagatcaaaacactgcattttaaaagctccaaggtgtcaaaatattacgtttaatagtcacaaatgatcattctagcactataaatg 53783219  T
Q  129 tcgtttaatattgctagaaagacatttgttgttgtaaa 166  Q
    | |||||||| || |||||||| |||||| ||||||||    
T  53783218 ttgtttaatagtgttagaaagatatttgtagttgtaaa 53783181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 30 - 166
Target Start/End: Complemental strand, 4276576 - 4276442
Alignment:
Q  30 aagttgttgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatcattctaacactattaatgt 129  Q
    |||| |||||||||||| ||| |||||  ||||||||| | || ||||||||||||||| ||||||| ||||| ||||||||||||| || ||| |||||    
T  4276576 aagtagttgactttgatcaaa-cgttgtcttttaaaagtttcaaggtgtcaaaacgttatgtttaatcgtcacaaatgatcattctagcattataaatgt 4276478  T
Q  130 cgtttaatattgctagaaagacatttgttgttgtaaa 166  Q
     |||||||| |||||| ||| ||||||||||||||||    
T  4276477 tgtttaatagtgctaggaag-catttgttgttgtaaa 4276442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 113
Target Start/End: Original strand, 21376754 - 21376849
Alignment:
Q  18 gatgtagctgctaagttgttgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatcatt 113  Q
    |||||||| | ||||||||||||||  ||||||| ||||  |||||||||||| | |||||||||||| || ||||||||||||| ||||||||||    
T  21376754 gatgtagccgttaagttgttgacttgaattaaaatgttgtcttttaaaagctcgatggtgtcaaaacgctacgtttaatggtcacaaatgatcatt 21376849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 29 - 128
Target Start/End: Complemental strand, 21376945 - 21376846
Alignment:
Q  29 taagttgttgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatcattctaacactattaatg 128  Q
    |||||||||| ||| ||| |||||||||  |||||||||||| |||||| ||||||| || ||||||| ||||| ||||||||||||| |||||| ||||    
T  21376945 taagttgttgtcttggatcaaaacgttgtcttttaaaagctctagggtgccaaaacgatatgtttaatcgtcacaaatgatcattctagcactataaatg 21376846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 19 - 128
Target Start/End: Original strand, 14629404 - 14629513
Alignment:
Q  19 atgtagctgctaagttgttgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatcattctaac 118  Q
    ||||||| | ||||||||||| ||  || |||||| ||| |||||||||||| |||||||||||| |||| ||||||| | | ||||||||||||||| |    
T  14629404 atgtagccgttaagttgttgatttgaatcaaaacgctgccttttaaaagctctagggtgtcaaaatgttacgtttaatcgccgcgaatgatcattctagc 14629503  T
Q  119 actattaatg 128  Q
    ||||| ||||    
T  14629504 actataaatg 14629513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 18 - 113
Target Start/End: Complemental strand, 35555919 - 35555824
Alignment:
Q  18 gatgtagctgctaagttgttgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatcatt 113  Q
    |||||||| | |||||||||||||| ||| |||| | | |||||||||||||| |||||||||||||| || |||||||| |||| ||| ||||||    
T  35555919 gatgtagccgttaagttgttgacttggatcaaaatgcttcattttaaaagctcaagggtgtcaaaacgctacgtttaatgatcacaaattatcatt 35555824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 29 - 113
Target Start/End: Original strand, 53783074 - 53783158
Alignment:
Q  29 taagttgttgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatcatt 113  Q
    ||||||||||| || ||| |||| | |||||||||||||  | |||||||||||||| || ||||||||||||| ||||||||||    
T  53783074 taagttgttgatttggatcaaaatgctgcattttaaaagaccgagggtgtcaaaacgctacgtttaatggtcacaaatgatcatt 53783158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 113
Target Start/End: Complemental strand, 14629605 - 14629510
Alignment:
Q  18 gatgtagctgctaagttgttgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatcatt 113  Q
    |||||||| | |||||| ||||||| ||| |||| | ||| |||||||||||| ||||||||||||   || ||||||||||||| ||||||||||    
T  14629605 gatgtagccgttaagttattgacttggatcaaaatgctgccttttaaaagctcgagggtgtcaaaaaactatgtttaatggtcacaaatgatcatt 14629510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 59 - 128
Target Start/End: Original strand, 35555758 - 35555827
Alignment:
Q  59 ttttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatcattctaacactattaatg 128  Q
    |||||||| ||||||||||| ||||||||| ||||||| ||||| |||||| |||||| |||||| ||||    
T  35555758 ttttaaaaactccagggtgttaaaacgttacgtttaatagtcacaaatgattattctagcactataaatg 35555827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 18 - 113
Target Start/End: Original strand, 4276323 - 4276419
Alignment:
Q  18 gatgtagctgctaagttgttgactttgattaaaacgttgcattttaaaagctccagggtgtc-aaaacgttaagtttaatggtcacgaatgatcatt 113  Q
    |||||||| | ||||||||||| || ||| |||| | ||| |||||||||||| |||||||| |||||| || ||||||||||||| ||| ||||||    
T  4276323 gatgtagcggttaagttgttgatttagatcaaaatggtgccttttaaaagctcgagggtgtcaaaaacgctacgtttaatggtcacaaataatcatt 4276419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 113
Target Start/End: Original strand, 24707595 - 24707690
Alignment:
Q  18 gatgtagctgctaagttgttgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatcatt 113  Q
    |||||||| | ||| ||||||| || ||| |||| ||||| ||| |||||||| |||||||||||||| ||  |||||||||||| ||| ||||||    
T  24707595 gatgtagccgttaaattgttgatttagatcaaaatgttgcctttaaaaagctcgagggtgtcaaaacgctacatttaatggtcacaaataatcatt 24707690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 111
Target Start/End: Complemental strand, 31247569 - 31247487
Alignment:
Q  29 taagttgttgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatca 111  Q
    |||||||||||||||||| |||| | ||| ||||||||||| || | ||| |||||  || ||||||| ||||| ||||||||    
T  31247569 taagttgttgactttgatcaaaatgctgccttttaaaagcttcaagatgttaaaacactacgtttaattgtcacaaatgatca 31247487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 78; Significance: 3e-36; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 29 - 166
Target Start/End: Complemental strand, 52866288 - 52866152
Alignment:
Q  29 taagttgttgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatcattctaacactattaatg 128  Q
    ||||||||| |||| ||| |||||||| | |||||||||||||||||||||||||| ||| ||||||| ||||| ||||||||||||| |||||| ||||    
T  52866288 taagttgttcacttggatcaaaacgtttctttttaaaagctccagggtgtcaaaacatta-gtttaatcgtcacaaatgatcattctagcactataaatg 52866190  T
Q  129 tcgtttaatattgctagaaagacatttgttgttgtaaa 166  Q
    |||||||||| || ||||| ||||||||||||||||||    
T  52866189 tcgtttaatagtgttagaacgacatttgttgttgtaaa 52866152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 23 - 166
Target Start/End: Complemental strand, 30543068 - 30542926
Alignment:
Q  23 agctgctaagttgttgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatcattctaacacta 122  Q
    ||||| ||| ||||||||||  || |||||||||  ||||||||||| || ||||||||||| ||| ||||||||||| | ||| |||||| ||||||||    
T  30543068 agctgttaaattgttgacttaaatcaaaacgttgacttttaaaagcttcatggtgtcaaaacattacgtttaatggtcgcaaat-atcattttaacacta 30542970  T
Q  123 ttaatgtcgtttaatattgctagaaagacatttgttgttgtaaa 166  Q
    | ||| |||||||||| |||||||||||||||||||||||||||    
T  30542969 taaatatcgtttaataatgctagaaagacatttgttgttgtaaa 30542926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 29 - 113
Target Start/End: Original strand, 52181914 - 52181998
Alignment:
Q  29 taagttgttgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatcatt 113  Q
    |||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||| || ||||||||||||| ||||||||||    
T  52181914 taagttgttgactttgatcaaaatgttgccttttaaaagctccagggtgtcaaaacgctacgtttaatggtcacaaatgatcatt 52181998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 71 - 166
Target Start/End: Original strand, 31229491 - 31229586
Alignment:
Q  71 cagggtgtcaaaacgttaagtttaatggtcacgaatgatcattctaacactattaatgtcgtttaatattgctagaaagacatttgttgttgtaaa 166  Q
    ||||||| |||||||||| ||||||| ||||| ||||||||||||| |||||| |||||||||||||| |||||||||  ||||| ||||||||||    
T  31229491 cagggtggcaaaacgttacgtttaatcgtcacaaatgatcattctagcactataaatgtcgtttaataatgctagaaatgcatttattgttgtaaa 31229586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 29 - 166
Target Start/End: Original strand, 8408540 - 8408680
Alignment:
Q  29 taagttgttgactttgattaaaacgttgcattttaaaagctccag-ggtgtcaaaacgttaagtttaatggtcacgaatgatcattctaacactattaat 127  Q
    ||||||||||||||  || |||| ||||| ||||| ||||| ||  ||||||||||||||| ||||||||||||| ||||||||||||| |||||| |||    
T  8408540 taagttgttgacttgaatcaaaatgttgccttttacaagcttcaaaggtgtcaaaacgttatgtttaatggtcacaaatgatcattctagcactataaat 8408639  T
Q  128 gtcgtttaat--attgctagaaagacatttgttgttgtaaa 166  Q
    ||| ||||||    ||| ||||||| |||||||||||||||    
T  8408640 gtcatttaattgtgtgcaagaaagatatttgttgttgtaaa 8408680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 29 - 166
Target Start/End: Original strand, 52567882 - 52568017
Alignment:
Q  29 taagttgttgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatcattctaacactattaatg 128  Q
    |||||| ||| ||| ||| |||| ||||  |||||||| || |||||||||||||||||| ||| ||||||||| ||| |||||| || |||||| |||     
T  52567882 taagttattgtcttggatcaaaatgttgtcttttaaaaacttcagggtgtcaaaacgttatgtt-aatggtcacaaat-atcattttagcactataaata 52567979  T
Q  129 tcgtttaatattgctagaaagacatttgttgttgtaaa 166  Q
    ||||| |||| |||||||||||||||| ||||||||||    
T  52567980 tcgttcaatagtgctagaaagacatttattgttgtaaa 52568017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 113
Target Start/End: Original strand, 19681376 - 19681471
Alignment:
Q  18 gatgtagctgctaagttgttgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatcatt 113  Q
    |||||||| | |||||||||||||| ||| | || ||||  |||||||||||| ||| ||||||||||||| ||||||||||||| ||||||||||    
T  19681376 gatgtagccgttaagttgttgacttggatcataatgttgtcttttaaaagctcgaggatgtcaaaacgttacgtttaatggtcacaaatgatcatt 19681471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 128
Target Start/End: Complemental strand, 52182104 - 52181995
Alignment:
Q  18 gatgtagctgctaagttgttgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatcattctaa 117  Q
    |||||||| | ||||||||||||||  || |||| | ||  |||||||||||||||||| ||||||| ||| ||||||| ||||| |||||||||||||     
T  52182104 gatgtagccgttaagttgttgacttaaatcaaaatgatgtcttttaaaagctccagggt-tcaaaacattatgtttaatagtcacaaatgatcattctag 52182006  T
Q  118 cactattaatg 128  Q
    |||||| ||||    
T  52182005 cactataaatg 52181995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 35 - 113
Target Start/End: Complemental strand, 52568118 - 52568040
Alignment:
Q  35 gttgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatcatt 113  Q
    |||||||| ||| |||| | ||| |||||||||||| |||||||||||||| || ||||||||||||| ||||||||||    
T  52568118 gttgacttggatcaaaatgatgcgttttaaaagctctagggtgtcaaaacgctacgtttaatggtcacaaatgatcatt 52568040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 59 - 166
Target Start/End: Complemental strand, 5387516 - 5387409
Alignment:
Q  59 ttttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatcattctaacactattaatgtcgtttaatattgctagaaagacatttgtt 158  Q
    ||||||||||| ||   |||||||| ||||  |||||| || |  ||||||||||||| |||| | |||||||||||||| || |||||||| |||||||    
T  5387516 ttttaaaagcttcaatatgtcaaaaagttacatttaatagttataaatgatcattctatcactgtaaatgtcgtttaatagtgatagaaagatatttgtt 5387417  T
Q  159 gttgtaaa 166  Q
    ||||||||    
T  5387416 gttgtaaa 5387409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 113
Target Start/End: Complemental strand, 19632183 - 19632088
Alignment:
Q  18 gatgtagctgctaagttgttgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatcatt 113  Q
    |||||||| | |||||||||||||  ||| |||| ||| |||||||||||||| || ||||||||||  || |||||| |||||| ||||||||||    
T  19632183 gatgtagccgttaagttgttgactaggatcaaaatgttacattttaaaagctcaagagtgtcaaaactctacgtttaacggtcacaaatgatcatt 19632088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 29 - 111
Target Start/End: Original strand, 30542819 - 30542901
Alignment:
Q  29 taagttgttgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatca 111  Q
    ||||||||| |||| |||||||| |||| ||||||||| ||| |||||||||||||| || |||||||| |||| ||| ||||    
T  30542819 taagttgttaacttagattaaaatgttgtattttaaaaactctagggtgtcaaaacgctacgtttaatgatcacaaataatca 30542901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 29 - 113
Target Start/End: Complemental strand, 31229693 - 31229609
Alignment:
Q  29 taagttgttgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatcatt 113  Q
    ||||||||||||||  || |||| | | | ||| |||||||| |||||||||||||| || ||||||||||||| ||||||||||    
T  31229693 taagttgttgacttgaatcaaaatgcttcctttcaaaagctcgagggtgtcaaaacgctatgtttaatggtcacaaatgatcatt 31229609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 166
Target Start/End: Original strand, 19631975 - 19632065
Alignment:
Q  76 tgtcaaaacgttaagtttaatggtcacgaatgatcattctaacactattaatgtcgtttaatattgctagaaagacatttgttgttgtaaa 166  Q
    |||||||| |||| |||| || ||| | ||||||||||||  ||| || || ||||||||||| | |||||||| ||||||||||||||||    
T  19631975 tgtcaaaatgttacgtttgatcgtcgcaaatgatcattcttgcacaataaacgtcgtttaataatactagaaaggcatttgttgttgtaaa 19632065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 166
Target Start/End: Complemental strand, 19681542 - 19681494
Alignment:
Q  118 cactattaatgtcgtttaatattgctagaaagacatttgttgttgtaaa 166  Q
    |||||| |||||||||||| | |||||||||| ||||||||||||||||    
T  19681542 cactataaatgtcgtttaagagtgctagaaaggcatttgttgttgtaaa 19681494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 113
Target Start/End: Original strand, 42115771 - 42115855
Alignment:
Q  29 taagttgttgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatcatt 113  Q
    ||||||| |||||| ||| |||||| ||| ||| ||| ||||||||  |||| || |||  ||||||||||||| ||||||||||    
T  42115771 taagttgctgacttggatcaaaacgatgcgtttcaaaggctccaggtagtcagaatgttgcgtttaatggtcacaaatgatcatt 42115855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 78; Significance: 3e-36; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 33 - 166
Target Start/End: Complemental strand, 11871672 - 11871539
Alignment:
Q  33 ttgttgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatcattctaacactattaatgtcgt 132  Q
    |||||||||||||| |||| | ||  ||||||||||| |||||||||||||||||| ||||||| ||||| ||||||||||||| |||||| ||||||||    
T  11871672 ttgttgactttgatcaaaatggtggcttttaaaagcttcagggtgtcaaaacgttacgtttaatcgtcacaaatgatcattctagcactataaatgtcgt 11871573  T
Q  133 ttaatattgctagaaagacatttgttgttgtaaa 166  Q
    |||||| || |||||| |||||||||||||||||    
T  11871572 ttaatagtggtagaaaaacatttgttgttgtaaa 11871539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 37 - 166
Target Start/End: Complemental strand, 39301750 - 39301621
Alignment:
Q  37 tgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatcattctaacactattaatgtcgtttaa 136  Q
    |||||| ||| |||||||||  |||||||||||||| ||||||||||| ||| ||||||| ||||  |||||||||||||||||||| ||||||||||||    
T  39301750 tgacttggatcaaaacgttgtcttttaaaagctccatggtgtcaaaactttacgtttaattgtcagaaatgatcattctaacactataaatgtcgtttaa 39301651  T
Q  137 tattgctagaaagacatttgttgttgtaaa 166  Q
    || |||||||||   |||||||||||||||    
T  39301650 tagtgctagaaaagtatttgttgttgtaaa 39301621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 18 - 166
Target Start/End: Complemental strand, 15506441 - 15506293
Alignment:
Q  18 gatgtagctgctaagttgttgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatcattctaa 117  Q
    |||||||| | ||| |||||||||||||| |||||  |   |||||||| ||||||||||||||||  ||| ||||||| ||||| |||||||||||||     
T  15506441 gatgtagccgttaaattgttgactttgatcaaaacactatgttttaaaatctccagggtgtcaaaatattacgtttaattgtcacaaatgatcattctag 15506342  T
Q  118 cactattaatgtcgtttaatattgctagaaagacatttgttgttgtaaa 166  Q
    |||||| |||| ||||||||| ||| ||||| |||||||||||||||||    
T  15506341 cactataaatgccgtttaatagtgcaagaaaaacatttgttgttgtaaa 15506293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 18 - 166
Target Start/End: Original strand, 20535630 - 20535778
Alignment:
Q  18 gatgtagctgctaagttgttgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatcattctaa 117  Q
    |||||||| | |||||||||||||| ||| |||||||||| |||||||||||| |  ||||||||| |||| ||||||| ||||| ||||| |||||||     
T  20535630 gatgtagccgttaagttgttgacttggatcaaaacgttgccttttaaaagctcaaaagtgtcaaaatgttacgtttaatcgtcacaaatgaccattctag 20535729  T
Q  118 cactattaatgtcgtttaatattgctagaaagacatttgttgttgtaaa 166  Q
    || ||| ||||   ||||||| || ||||||||||||||||||||||||    
T  20535730 cattataaatgcattttaatagtgttagaaagacatttgttgttgtaaa 20535778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 71 - 166
Target Start/End: Complemental strand, 19081029 - 19080934
Alignment:
Q  71 cagggtgtcaaaacgttaagtttaatggtcacgaatgatcattctaacactattaatgtcgtttaatattgctagaaagacatttgttgttgtaaa 166  Q
    ||||||||||||||||||  |||||| ||||||| |||||||||||||||||| |||| ||||||||| || ||||||||||||||||||||||||    
T  19081029 cagggtgtcaaaacgttacatttaatcgtcacgactgatcattctaacactataaatgacgtttaatagtggtagaaagacatttgttgttgtaaa 19080934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 48 - 166
Target Start/End: Original strand, 27893261 - 27893379
Alignment:
Q  48 aaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatcattctaacactattaatgtcgtttaatattgctagaa 147  Q
    ||||||||||  ||||||||||||||||||| |  |||||| ||||||| ||||| |||||||||||||  | ||| |||||||||||||| ||||||||    
T  27893261 aaaacgttgccatttaaaagctccagggtgttaggacgttacgtttaatcgtcacaaatgatcattctagaattataaatgtcgtttaatagtgctagaa 27893360  T
Q  148 agacatttgttgttgtaaa 166  Q
    |||| ||||||||||||||    
T  27893361 agacgtttgttgttgtaaa 27893379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 29 - 113
Target Start/End: Complemental strand, 36196429 - 36196345
Alignment:
Q  29 taagttgttgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatcatt 113  Q
    |||||||||||||| ||| |||| | ||| |||||||| ||| |||||||||||||| || ||||||||||||| ||||||||||    
T  36196429 taagttgttgacttggatcaaaatgctgccttttaaaaactcgagggtgtcaaaacgctacgtttaatggtcacaaatgatcatt 36196345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 113
Target Start/End: Complemental strand, 20535896 - 20535801
Alignment:
Q  18 gatgtagctgctaagttgttgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatcatt 113  Q
    |||||||| | |||||| ||||||| ||| |||| || || |||||||||||| ||||||| |||||  || ||||||||||||| ||| ||||||    
T  20535896 gatgtagccgttaagttattgacttggatcaaaatgtagccttttaaaagctcgagggtgttaaaacactacgtttaatggtcacaaataatcatt 20535801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 29 - 102
Target Start/End: Original strand, 39301514 - 39301587
Alignment:
Q  29 taagttgttgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcac 102  Q
    |||||||||||||| ||| |||| ||| ||||| ||||| |  |||||||||||||| || |||||||||||||    
T  39301514 taagttgttgacttagatcaaaatgtttcatttaaaaagtttgagggtgtcaaaacgctacgtttaatggtcac 39301587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 113
Target Start/End: Original strand, 19080857 - 19080911
Alignment:
Q  59 ttttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatcatt 113  Q
    |||||||||||| |||||||||||| | || |||||||| |||| ||||||||||    
T  19080857 ttttaaaagctcgagggtgtcaaaatgctatgtttaatgatcacaaatgatcatt 19080911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 73; Significance: 3e-33; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 18 - 166
Target Start/End: Original strand, 10686384 - 10686532
Alignment:
Q  18 gatgtagctgctaagttgttgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatcattctaa 117  Q
    |||||||| | ||||||||||||||  || ||||  |||| ||||||||||||  |||||||||||| ||| ||||||| ||||| |||||||||||||     
T  10686384 gatgtagccgttaagttgttgacttgtatcaaaatattgccttttaaaagctctggggtgtcaaaacattacgtttaatcgtcacaaatgatcattctag 10686483  T
Q  118 cactattaatgtcgtttaatattgctagaaagacatttgttgttgtaaa 166  Q
    |||||| |||| ||||||||  |||||||||||||||||||||||||||    
T  10686484 cactataaatgccgtttaatcgtgctagaaagacatttgttgttgtaaa 10686532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 18 - 162
Target Start/End: Original strand, 8902949 - 8903093
Alignment:
Q  18 gatgtagctgctaagttgttgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatcattctaa 117  Q
    |||||||| | |||||||||||||| ||| |||||| ||| ||||||||||||||  |||||||||||||| ||||||| ||||| | |||||||||||     
T  8902949 gatgtagccgttaagttgttgacttggatcaaaacgatgccttttaaaagctccaccgtgtcaaaacgttacgtttaatcgtcacaagtgatcattctag 8903048  T
Q  118 cactattaatgtcgtttaatattgctagaaagacatttgttgttg 162  Q
    || |||  |||||||| |||| || ||||||||||||||||||||    
T  8903049 cattatatatgtcgttgaatagtgttagaaagacatttgttgttg 8903093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 29 - 166
Target Start/End: Original strand, 4030441 - 4030578
Alignment:
Q  29 taagttgttgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatcattctaacactattaatg 128  Q
    |||||||||||||||||| |||||  ||| ||||||||| |||| | |||  |||||||| ||||||| ||||| ||||||||||||| |||||| ||||    
T  4030441 taagttgttgactttgatcaaaacactgccttttaaaagttccatgatgtagaaacgttacgtttaatcgtcaccaatgatcattctaccactataaatg 4030540  T
Q  129 tcgtttaatattgctagaaagacatttgttgttgtaaa 166  Q
      |||||||| |||||||||  ||||| ||||||||||    
T  4030541 ctgtttaatagtgctagaaatgcattttttgttgtaaa 4030578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 29 - 158
Target Start/End: Original strand, 4772292 - 4772420
Alignment:
Q  29 taagttgttgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatcattctaacactattaatg 128  Q
    |||||||||||||| |||  ||||  ||| ||||||||||| | || ||||||||||||| ||||||||||||| ||||||||||||| || | | ||||    
T  4772292 taagttgttgacttggatcgaaactctgccttttaaaagcttctgg-tgtcaaaacgttacgtttaatggtcacaaatgatcattctagcattgtaaatg 4772390  T
Q  129 tcgtttaatattgctagaaagacatttgtt 158  Q
    | |||||||| |||||||||||||||||||    
T  4772391 ttgtttaatagtgctagaaagacatttgtt 4772420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 29 - 166
Target Start/End: Complemental strand, 34254939 - 34254804
Alignment:
Q  29 taagttgttgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatcattctaacactattaatg 128  Q
    ||||||||||||||  || |||||| ||  ||||||||||| |||| ||||||||||||| ||||||||||||| ||| |||||| |  |||||| ||||    
T  34254939 taagttgttgacttgtatcaaaacgctgtcttttaaaagcttcagg-tgtcaaaacgttacgtttaatggtcacaaat-atcattttggcactataaatg 34254842  T
Q  129 tcgtttaatattgctagaaagacatttgttgttgtaaa 166  Q
    |||||||||| ||||||||||  |||||||||||||||    
T  34254841 tcgtttaatagtgctagaaagtaatttgttgttgtaaa 34254804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 18 - 166
Target Start/End: Complemental strand, 29418981 - 29418833
Alignment:
Q  18 gatgtagctgctaagttgttgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatcattctaa 117  Q
    |||||||| | |||||||||||||| ||| ||||   ||  |||||||| |||||||||||||| |||||| |||||||  |||| ||| |||||| |||    
T  29418981 gatgtagccgttaagttgttgacttggatcaaaatactgtcttttaaaaactccagggtgtcaacacgttacgtttaatcatcacaaataatcattataa 29418882  T
Q  118 cactattaatgtcgtttaatattgctagaaagacatttgttgttgtaaa 166  Q
    |||||| |||||||||||||| || ||||||  |||||| |||||||||    
T  29418881 cactataaatgtcgtttaatagtgatagaaatgcatttgctgttgtaaa 29418833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 113
Target Start/End: Complemental strand, 27351480 - 27351385
Alignment:
Q  18 gatgtagctgctaagttgttgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatcatt 113  Q
    |||||||| | |||||||||||||||||| |||| ||||  |||||||||||| |||||||| ||| | ||| |||||||||||| ||||||||||    
T  27351480 gatgtagccgttaagttgttgactttgatcaaaatgttgttttttaaaagctctagggtgtcgaaatgctaattttaatggtcacaaatgatcatt 27351385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 29 - 102
Target Start/End: Complemental strand, 49650942 - 49650869
Alignment:
Q  29 taagttgttgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcac 102  Q
    |||||||||||||| ||| |||||| ||| |||||||| |||||||||||||||| | || |||||||||||||    
T  49650942 taagttgttgacttggatcaaaacgctgccttttaaaatctccagggtgtcaaaatgctacgtttaatggtcac 49650869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 113
Target Start/End: Complemental strand, 10686638 - 10686555
Alignment:
Q  30 aagttgttgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatcatt 113  Q
    |||||||| |||| ||| |||| ||||  |||||||||||| |||||||||||||  || ||||||||||||| ||||||||||    
T  10686638 aagttgtttacttggatcaaaatgttgtcttttaaaagctcgagggtgtcaaaacactacgtttaatggtcacaaatgatcatt 10686555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 48 - 113
Target Start/End: Original strand, 39302483 - 39302548
Alignment:
Q  48 aaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatcatt 113  Q
    |||| ||||| ||||||||||| ||||||||||||||| || ||||||||||||| |||| |||||    
T  39302483 aaaatgttgccttttaaaagcttcagggtgtcaaaacgctacgtttaatggtcacaaatggtcatt 39302548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 33 - 109
Target Start/End: Original strand, 27351257 - 27351333
Alignment:
Q  33 ttgttgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgat 109  Q
    ||||||||||  || |||| ||||| ||||||||| | |||||||||||||||||| ||||||| ||||| ||||||    
T  27351257 ttgttgacttgaatcaaaatgttgccttttaaaagatacagggtgtcaaaacgttacgtttaatcgtcacaaatgat 27351333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 29 - 113
Target Start/End: Original strand, 34254697 - 34254781
Alignment:
Q  29 taagttgttgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatcatt 113  Q
    |||||||||||||| ||| |||| | ||| ||||||||||| || ||||| |||||| || ||||||||||||| || |||||||    
T  34254697 taagttgttgacttggatcaaaatgctgccttttaaaagcttcatggtgttaaaacgctatgtttaatggtcacaaacgatcatt 34254781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 16 - 113
Target Start/End: Complemental strand, 39302632 - 39302539
Alignment:
Q  16 cagatgtagctgctaagttgttgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatcatt 113  Q
    |||||||||| | |||||||||||||| |||    ||||||  ||||||||||| ||||||||||||| || | ||||||||||||| ||||| ||||    
T  39302632 cagatgtagccgttaagttgttgacttggat----acgttgtcttttaaaagcttcagggtgtcaaaatgtcacgtttaatggtcacaaatgaccatt 39302539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 113
Target Start/End: Complemental strand, 4772582 - 4772488
Alignment:
Q  18 gatgtagctgctaagttgttgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatcatt 113  Q
    ||||||||||  |||||||||| || ||| |||| ||||| |||||||||||  |||||||||||| |||| ||||||||| ||| ||| ||||||    
T  4772582 gatgtagctgtgaagttgttgatttagatcaaaatgttgccttttaaaagcttgagggtgtcaaaa-gttatgtttaatggccacaaataatcatt 4772488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 20 - 113
Target Start/End: Original strand, 37663236 - 37663329
Alignment:
Q  20 tgtagctgctaagttgttgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatcatt 113  Q
    |||||| | |||||||||| ||| ||| |||| ||||  |||||||||||| | |||| ||||| | || ||||||||||||| ||||||||||    
T  37663236 tgtagccgataagttgttgtcttggatcaaaatgttgtcttttaaaagctcgaaggtgacaaaatgctacgtttaatggtcacaaatgatcatt 37663329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 113
Target Start/End: Complemental strand, 8903200 - 8903120
Alignment:
Q  33 ttgttgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatcatt 113  Q
    ||||| |||| ||| |||| | ||| ||||||||| || ||||||| |||||| |||||||||||||||  ||||||||||    
T  8903200 ttgttaacttggatcaaaatggtgccttttaaaagttcgagggtgtaaaaacgctaagtttaatggtcataaatgatcatt 8903120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 102
Target Start/End: Original strand, 49650753 - 49650837
Alignment:
Q  18 gatgtagctgctaagttgttgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcac 102  Q
    |||||||| | ||||||||||| || ||| |||| ||||  ||||||||| | ||||||||||||||| || |||||||| ||||    
T  49650753 gatgtagccgttaagttgttgatttggatcaaaatgttgtcttttaaaagtttcagggtgtcaaaacgatacgtttaatgatcac 49650837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 33 - 166
Target Start/End: Complemental strand, 9823 - 9690
Alignment:
Q  33 ttgttgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatcattctaacactattaatgtcgt 132  Q
    |||||||||| ||| |||||| ||  ||||||||||||||||||||||||||||||  |||||| ||||| ||||||||||||| || ||| ||||||||    
T  9823 ttgttgacttggatcaaaacgctgtcttttaaaagctccagggtgtcaaaacgttacatttaatcgtcacaaatgatcattctagcattataaatgtcgt 9724  T
Q  133 ttaatattgctagaaagacatttgttgttgtaaa 166  Q
    |||||| || |  |||||||||||||||||||||    
T  9723 ttaatagtgttgaaaagacatttgttgttgtaaa 9690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 18 - 113
Target Start/End: Original strand, 9573 - 9668
Alignment:
Q  18 gatgtagctgctaagttgttgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatcatt 113  Q
    ||||||| || |||||||||||||||||| ||||  |||| |||||||||||| |||||||||||||| || ||||||||||||| ||||||||||    
T  9573 gatgtagttgttaagttgttgactttgatcaaaatattgccttttaaaagctcgagggtgtcaaaacgctacgtttaatggtcacaaatgatcatt 9668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 18 - 166
Target Start/End: Complemental strand, 28995 - 28849
Alignment:
Q  18 gatgtagctgctaagttgttgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatcattctaa 117  Q
    |||||||| | ||||||||||| || ||| |||||| ||| ||||||||||| | |||||||||||||||| |||||||| |||| ||  |||||| ||     
T  28995 gatgtagcggttaagttgttgatttggatcaaaacgatgccttttaaaagcttc-gggtgtcaaaacgttacgtttaatgatcacaaac-atcattttag 28898  T
Q  118 cactattaatgtcgtttaatattgctagaaagacatttgttgttgtaaa 166  Q
    |||||| |||||||||||||| ||||  |||  ||||||||||||||||    
T  28897 cactataaatgtcgtttaatagtgctcaaaatgcatttgttgttgtaaa 28849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0746 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: scaffold0746
Description:

Target: scaffold0746; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 29 - 166
Target Start/End: Original strand, 219 - 354
Alignment:
Q  29 taagttgttgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaacgttaagtttaatggtcacgaatgatcattctaacactattaatg 128  Q
    |||||||||||  | ||| ||| || ||| ||||||||||| | |||||||||||||||| ||||||||||||| ||  |||||| || |||||| ||||    
T  219 taagttgttgatgtggatcaaagcgatgccttttaaaagcttc-gggtgtcaaaacgttacgtttaatggtcac-aaacatcattttagcactataaatg 316  T
Q  129 tcgtttaatattgctagaaagacatttgttgttgtaaa 166  Q
    |||||||||| ||||  |||  ||||||| ||||||||    
T  317 tcgtttaatagtgctcaaaatgcatttgtggttgtaaa 354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0746; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 471 - 406
Alignment:
Q  18 gatgtagctgctaagttgttgactttgattaaaacgttgcattttaaaagctccagggtgtcaaaa 83  Q
    |||||||| | |||||||||||||| ||| | || ||||| |||||||||||||| ||||| ||||    
T  471 gatgtagccgttaagttgttgacttggatcacaatgttgccttttaaaagctccatggtgtaaaaa 406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 328 - 370
Target Start/End: Complemental strand, 52694 - 52652
Alignment:
Q  328 tgtggagtatttggaaaaacagaaataacaagatttggaatga 370  Q
    ||||||||||||||||| | ||||||||||||||| |||||||    
T  52694 tgtggagtatttggaaacaaagaaataacaagattaggaatga 52652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 324 - 358
Target Start/End: Complemental strand, 249147 - 249113
Alignment:
Q  324 cttatgtggagtatttggaaaaacagaaataacaa 358  Q
    |||||||||||||||||||||||| ||||||||||    
T  249147 cttatgtggagtatttggaaaaactgaaataacaa 249113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University