View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9852_low_22 (Length: 377)
Name: NF9852_low_22
Description: NF9852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9852_low_22 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 334; Significance: 0; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 22 - 367
Target Start/End: Complemental strand, 3576242 - 3575897
Alignment:
| Q |
22 |
gggtcgtcagcgaggcccaatgggtcaaagcttccacctgggtagagtgggtcgactacctcaccaagaggtccaccggcaatacggtaaccctcaacag |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3576242 |
gggtcgtcagcgaggcccaatgggtcaaagcttccacctgggtagagtgggtcgactacctcaccaagaggtccaccggcaatacggtaaccctcaacag |
3576143 |
T |
|
| Q |
122 |
ctcccattaagataacttggacagcccatatagcaaggatgctttgtgcatggactaggcttgggttacccaagtagtcaagtcctccctcactaaagat |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3576142 |
ctcccattaagataacttggacagcccatatagcaaggatactttgtgcgtggactaggcttgggttacccaagtagtcaagtcctccctcactaaagat |
3576043 |
T |
|
| Q |
222 |
ttgagatcctgccttgaaccacacagcctcgccgaatttcacaccattgcgagacaagagctcggggaagacacatcccaaagctcctaacatagcccat |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3576042 |
ttgagatcctgccttgaaccacacagcctcgccgaatttcacaccattgcgagacaagagctcggggaagacacatcccaaagctcctaacatagcccat |
3575943 |
T |
|
| Q |
322 |
ctactgtgtatgacctcgagttcacggttcttggcaaatgtctctg |
367 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3575942 |
ctactgtggatgacctcgagttcacggttcttggcaaatgtctctg |
3575897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 22 - 367
Target Start/End: Original strand, 3584976 - 3585321
Alignment:
| Q |
22 |
gggtcgtcagcgaggcccaatgggtcaaagcttccacctgggtagagtgggtcgactacctcaccaagaggtccaccggcaatacggtaaccctcaacag |
121 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
3584976 |
gggtcctcagcaaggcccaatgggtcaaagcttccacctggatagagtgggtcgactacctcaccaagaggtccaccggcaatacggtaaccttcaacag |
3585075 |
T |
|
| Q |
122 |
ctcccattaagataacttggacagcccatatagcaaggatgctttgtgcatggactaggcttgggttacccaagtagtcaagtcctccctcactaaagat |
221 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
3585076 |
ctcccattaagataacttggacagcccaaatagcaaggatgctttgtgcatggactaggcttgggttacccaagtagtcaagtccaccctcactaaagat |
3585175 |
T |
|
| Q |
222 |
ttgagatcctgccttgaaccacacagcctcgccgaatttcacaccattgcgagacaagagctcggggaagacacatcccaaagctcctaacatagcccat |
321 |
Q |
| |
|
||||||||||||||| |||||||||||||| |||||||||||||||||||||| |||||| || |||||||||||||| || || || |||||||||||| |
|
|
| T |
3585176 |
ttgagatcctgccttaaaccacacagcctcaccgaatttcacaccattgcgagccaagagttctgggaagacacatcctaaggcacccaacatagcccat |
3585275 |
T |
|
| Q |
322 |
ctactgtgtatgacctcgagttcacggttcttggcaaatgtctctg |
367 |
Q |
| |
|
||||| || |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
3585276 |
ctactatgaatgacctcgagttcacggtttttggcaaatgtctctg |
3585321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 34 - 367
Target Start/End: Complemental strand, 3564251 - 3563918
Alignment:
| Q |
34 |
aggcccaatgggtcaaagcttccacctgggtagagtgggtcgactacctcaccaagaggtccaccggcaatacggtaaccctcaacagctcccattaaga |
133 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||||||||||| || |||||||| ||||||||||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
3564251 |
aggcccaaggggtcaaagctgccacctgggtagagtgggtcaaccacctcaccgagaggtccaccagcaatacggtaaccctcaacagcacccattaaga |
3564152 |
T |
|
| Q |
134 |
taacttggacagcccatatagcaaggatgctttgtgcatggactaggcttgggttacccaagtagtcaagtcctccctcactaaagatttgagatcctgc |
233 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||| ||||| |||||||| |
|
|
| T |
3564151 |
taacttggacagcccatatagcaaggatgctttgtgcatggactagacttgggttacccaagtagtcaagcccaccctcactaaaaatttgggatcctgc |
3564052 |
T |
|
| Q |
234 |
cttgaaccacacagcctcgccgaatttcacaccattgcgagacaagagctcggggaagacacatcccaaagctcctaacatagcccatctactgtgtatg |
333 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||| || || |||||||||||||||||||| ||| |
|
|
| T |
3564051 |
cttgaaccatacagcctcgccgaatttgacaccattgcgagataagagctcagggaagacacatcccaaggcacccaacatagcccatctactgtggatg |
3563952 |
T |
|
| Q |
334 |
acctcgagttcacggttcttggcaaatgtctctg |
367 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |
|
|
| T |
3563951 |
acctcgagttcacggtttttggcaaatgtctctg |
3563918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 34 - 367
Target Start/End: Complemental strand, 3569899 - 3569566
Alignment:
| Q |
34 |
aggcccaatgggtcaaagcttccacctgggtagagtgggtcgactacctcaccaagaggtccaccggcaatacggtaaccctcaacagctcccattaaga |
133 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||||||| ||||||||||| || ||||||||||| ||||||||||||||||| || || |||||||||| |
|
|
| T |
3569899 |
aggcccaaggggtcaaagctgccacctgggtagagtggatcgactacctcgcctagaggtccaccagcaatacggtaaccctccacggcgcccattaaga |
3569800 |
T |
|
| Q |
134 |
taacttggacagcccatatagcaaggatgctttgtgcatggactaggcttgggttacccaagtagtcaagtcctccctcactaaagatttgagatcctgc |
233 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
3569799 |
taacttggactgcccatatagcaaggatgctttgtgcatggactagacttgggttacccaagtagtcaagtccaccctcactaaagatttgggatcctgc |
3569700 |
T |
|
| Q |
234 |
cttgaaccacacagcctcgccgaatttcacaccattgcgagacaagagctcggggaagacacatcccaaagctcctaacatagcccatctactgtgtatg |
333 |
Q |
| |
|
|||||||||||| ||||| ||||||| |||||||||||||| |||||||| ||||||||||||||||| || || |||||||||||||||||||| ||| |
|
|
| T |
3569699 |
cttgaaccacacggcctcaccgaattgtacaccattgcgagataagagctcagggaagacacatcccaaggcacccaacatagcccatctactgtggatg |
3569600 |
T |
|
| Q |
334 |
acctcgagttcacggttcttggcaaatgtctctg |
367 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
3569599 |
acctcgagttcacggttcttggcaaatgtctctg |
3569566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 22 - 350
Target Start/End: Complemental strand, 3572958 - 3572630
Alignment:
| Q |
22 |
gggtcgtcagcgaggcccaatgggtcaaagcttccacctgggtagagtgggtcgactacctcaccaagaggtccaccggcaatacggtaaccctcaacag |
121 |
Q |
| |
|
||||| ||||| ||||| ||||||||||| || ||||||||||||||||||||||| |||||||| ||||||||||| |||||||| ||||||||||||| |
|
|
| T |
3572958 |
gggtcatcagctaggcctaatgggtcaaaactaccacctgggtagagtgggtcgacaacctcaccgagaggtccacctgcaatacgataaccctcaacag |
3572859 |
T |
|
| Q |
122 |
ctcccattaagataacttggacagcccatatagcaaggatgctttgtgcatggactaggcttgggttacccaagtagtcaagtcctccctcactaaagat |
221 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||| |||||||||||||| |
|
|
| T |
3572858 |
cacccattaagataacttggacagcccatatagcaaggatgctttgtgcatggactagacttggatttcccaagtagtcaagtccaccctcactaaagat |
3572759 |
T |
|
| Q |
222 |
ttgagatcctgccttgaaccacacagcctcgccgaatttcacaccattgcgagacaagagctcggggaagacacatcccaaagctcctaacatagcccat |
321 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |||||||| ||||||||||||| ||||||||| ||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
3572758 |
ttgagatcctgccttgaaccacacggcctcaccgaatttaacaccattgcgagccaagagctcagggaagacacatcccaaggctcccaacatagcccac |
3572659 |
T |
|
| Q |
322 |
ctactgtgtatgacctcgagttcacggtt |
350 |
Q |
| |
|
|||||||| |||||||| ||||||||||| |
|
|
| T |
3572658 |
ctactgtgaatgacctctagttcacggtt |
3572630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 22 - 226
Target Start/End: Complemental strand, 3578098 - 3577894
Alignment:
| Q |
22 |
gggtcgtcagcgaggcccaatgggtcaaagcttccacctgggtagagtgggtcgactacctcaccaagaggtccaccggcaatacggtaaccctcaacag |
121 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
3578098 |
gggtcgtctgcgaggcccaatgggtcaaagcttccaccggggtagagtggatcgactacctcaccaagaggtccatcggcaatacggtaaccctcaacag |
3577999 |
T |
|
| Q |
122 |
ctcccattaagataacttggacagcccatatagcaaggatgctttgtgcatggactaggcttgggttacccaagtagtcaagtcctccctcactaaagat |
221 |
Q |
| |
|
|||||||||||||| || ||||| |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
3577998 |
ctcccattaagatagctaggacaacccaaatagcaaggatgctttgtgcgtggactaggcttgggttacccaagtagtcaagccctccatcactaaagat |
3577899 |
T |
|
| Q |
222 |
ttgag |
226 |
Q |
| |
|
||||| |
|
|
| T |
3577898 |
ttgag |
3577894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 22 - 243
Target Start/End: Complemental strand, 13276189 - 13275968
Alignment:
| Q |
22 |
gggtcgtcagcgaggcccaatgggtcaaagcttccacctgggtagagtgggtcgactacctcaccaagaggtccaccggcaatacggtaaccctcaacag |
121 |
Q |
| |
|
||||| || ||||| ||||||||||| ||||| |||||||||||||||||||| | |||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
13276189 |
gggtcatcggcgagacccaatgggtcgaagctaccacctgggtagagtgggtcaatcacctcaccaagaggtccaccagcaatacggtaaccctcaacag |
13276090 |
T |
|
| Q |
122 |
ctcccattaagataacttggacagcccatatagcaaggatgctttgtgcatggactaggcttgggttacccaagtagtcaagtcctccctcactaaagat |
221 |
Q |
| |
|
| ||||| |||||||||||| |||||||| |||||||||||||||||||| || || |||||||| ||||| ||||| || || |||||||||||||| |
|
|
| T |
13276089 |
cacccatcaagataacttggcaggcccatatggcaaggatgctttgtgcatgtacaagacttgggttgcccaaatagtctagcccaccctcactaaagat |
13275990 |
T |
|
| Q |
222 |
ttgagatcctgccttgaaccac |
243 |
Q |
| |
|
||| || | |||||||||||| |
|
|
| T |
13275989 |
ttgggacctggccttgaaccac |
13275968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 186; Significance: 1e-100; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 22 - 367
Target Start/End: Complemental strand, 38357278 - 38356933
Alignment:
| Q |
22 |
gggtcgtcagcgaggcccaatgggtcaaagcttccacctgggtagagtgggtcgactacctcaccaagaggtccaccggcaatacggtaaccctcaacag |
121 |
Q |
| |
|
||||||||||| |||||||||||||||||||| || |||||||| |||||||| || |||||||||||||| ||||| |||||||||||||| ||||||| |
|
|
| T |
38357278 |
gggtcgtcagctaggcccaatgggtcaaagctgcctcctgggtatagtgggtcaacaacctcaccaagaggaccaccagcaatacggtaaccttcaacag |
38357179 |
T |
|
| Q |
122 |
ctcccattaagataacttggacagcccatatagcaaggatgctttgtgcatggactaggcttgggttacccaagtagtcaagtcctccctcactaaagat |
221 |
Q |
| |
|
| ||||| |||||||||||| |||||| || ||||| ||||| || |||||||| | |||||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
38357178 |
cgcccatcaagataacttgggtagcccagatggcaagaatgctctgagcatggaccaaacttgggttacccaagtagtcaagtccaccctcgctaaagat |
38357079 |
T |
|
| Q |
222 |
ttgagatcctgccttgaaccacacagcctcgccgaatttcacaccattgcgagacaagagctcggggaagacacatcccaaagctcctaacatagcccat |
321 |
Q |
| |
|
|| ||||| ||||||||||| |||||||| |||||||| ||||||||||||||||| ||||| ||||| ||||||||||| ||||| ||||||||||| |
|
|
| T |
38357078 |
ctgggatccggccttgaaccatacagcctcaccgaatttaacaccattgcgagacaaaagctctgggaaaacacatcccaaggctcccaacatagcccac |
38356979 |
T |
|
| Q |
322 |
ctactgtgtatgacctcgagttcacggttcttggcaaatgtctctg |
367 |
Q |
| |
|
||||| || ||||| || ||||||||||||||||| |||||||||| |
|
|
| T |
38356978 |
ctactatggatgacttcaagttcacggttcttggcgaatgtctctg |
38356933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 266
Target Start/End: Complemental strand, 42602953 - 42602831
Alignment:
| Q |
144 |
agcccatatagcaaggatgctttgtgcatggactaggcttgggttacccaagtagtcaagtcctccctcactaaagatttgagatcctgccttgaaccac |
243 |
Q |
| |
|
|||||| || ||||| ||||| || ||||||| ||| ||||||| ||||| |||||||| || |||||| ||||| || | || ||||| |||||| |
|
|
| T |
42602953 |
agcccagattgcaagaatgctctgagcatggatcaggtttgggttgcccaaatagtcaaggccaccctcagagaagatctgggcaccagccttaaaccac |
42602854 |
T |
|
| Q |
244 |
acagcctcgccgaatttcacacc |
266 |
Q |
| |
|
|||||||| |||||||| ||||| |
|
|
| T |
42602853 |
acagcctcaccgaatttaacacc |
42602831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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