View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9852_low_23 (Length: 370)

Name: NF9852_low_23
Description: NF9852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9852_low_23
NF9852_low_23
[»] chr1 (4 HSPs)
chr1 (14-247)||(26617601-26617834)
chr1 (37-370)||(35150373-35150710)
chr1 (37-370)||(9928140-9928478)
chr1 (239-370)||(26616776-26616907)
[»] chr7 (5 HSPs)
chr7 (37-301)||(12077831-12078100)
chr7 (104-323)||(20964055-20964275)
chr7 (41-157)||(9348975-9349096)
chr7 (182-282)||(24409231-24409331)
chr7 (54-94)||(25114008-25114048)
[»] chr5 (1 HSPs)
chr5 (37-143)||(18552639-18552750)
[»] chr4 (2 HSPs)
chr4 (104-155)||(3441766-3441817)
chr4 (182-262)||(32930566-32930646)


Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 14 - 247
Target Start/End: Complemental strand, 26617834 - 26617601
Alignment:
Q  14 agagacggggcataaaggagaaaaactcattttcattctcccaaagtttaaggtttcgatgcttccttagactccaaagaatagttgcgctgaacatgtt 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||    
T  26617834 agagacggggcataaaggagaaaaactcattttcattctcccaaagtttaaggtttcaatgcttccatagactccaaagaatagttgcgctgaacatgtt 26617735  T
Q  114 cctgggataaattttgcaacaaggaaaatatagcatctatagtcgaatttgtgatgagaaccgtatgatttacctcattccatagtccagccatttgcca 213  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  26617734 cctggtataaattttgcaacaaggaaaatatagcatctatagtcgaatttgtgatgagaaccatatgatttacctcattccatagtccagccatttgcca 26617635  T
Q  214 tacttgcacttcaaaaggacaatcaaatataata 247  Q
    ||||||||||||||||||||||||||||||||||    
T  26617634 tacttgcacttcaaaaggacaatcaaatataata 26617601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 37 - 370
Target Start/End: Complemental strand, 35150710 - 35150373
Alignment:
Q  37 aactcattttcattctcccaaagtttaaggtttcgatgcttccttagactccaaagaatagttgcgct-----gaacatgttcctgggataaattttgca 131  Q
    |||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||| || |  |     |||||||||| || |||||||||||||    
T  35150710 aactcattttcattctcccaaagtttaaggtttcgatgcttccacagactccaaagaatatttaccatacagtgaacatgttcttgtgataaattttgca 35150611  T
Q  132 acaaggaaaatatagcatctatagtcgaatttgtgatgagaaccgtatgatttacctcattccatagtccagccatttgccatacttgcacttcaaaagg 231  Q
    |||||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||| |||||||||||||||||| ||| ||||||||| |||||||    
T  35150610 acaaggaaaatatagcatctatagacgaatttgtgataagaaccgcatgatttacctcactccatagtccagccattttccaaacttgcactgcaaaagg 35150511  T
Q  232 acaatcaaatataatatgtgcaagatcttcatggttagaactacagctaacgcattctgttgaacattgaacccctttgtcttgaagccgaacttgagtc 331  Q
    |||||||||||||||||||| |||||||||||||||||||||||| ||||| || | ||||||||| ||||||||||||||||||||||||||| ||||     
T  35150510 acaatcaaatataatatgtgtaagatcttcatggttagaactacaactaacacaatttgttgaaca-tgaacccctttgtcttgaagccgaactcgagtt 35150412  T
Q  332 gacaaatatcccatacacatccgccatacaagattcttc 370  Q
    | |||  | ||| | ||||||||||||||||||||||||    
T  35150411 ggcaatcagcccctgcacatccgccatacaagattcttc 35150373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 37 - 370
Target Start/End: Complemental strand, 9928478 - 9928140
Alignment:
Q  37 aactcattttcattctcccaaagtttaaggtttcgatgcttccttagactccaaagaatagttg-----cgctgaacatgttcctgggataaattttgca 131  Q
    |||||||||||||| ||||||||||||||||||||||||||||  | ||||| ||| |||| ||     |  |||||||||||||| |||||||||||||    
T  9928478 aactcattttcattttcccaaagtttaaggtttcgatgcttccacaaactcctaagtatagctgtcatacattgaacatgttcctgtgataaattttgca 9928379  T
Q  132 acaaggaaaatatagcatctatagtcgaatttgtgatgagaaccgtatgatttacctcattccatagtccagccatttgccatacttgcacttcaaaagg 231  Q
    ||||||||||||||| ||||||||| |||| |||||||||||||  ||||||||||||||||||||||||| |||||||||||||||||| |  |||||     
T  9928378 acaaggaaaatatagtatctatagttgaatctgtgatgagaacctcatgatttacctcattccatagtccaaccatttgccatacttgcattgaaaaagt 9928279  T
Q  232 acaatcaaatataatatgtgcaagatcttcatggttagaactacagctaacgcattctgttgaacattgaacccctttgtcttgaagccgaacttgagtc 331  Q
    ||||| |||||||||||||||||||| |||||||||||||||| ||||||| || | | |||||||||||||||||||||||||||||| |||| |||||    
T  9928278 acaataaaatataatatgtgcaagattttcatggttagaactagagctaacacaatttattgaacattgaacccctttgtcttgaagccaaactcgagtc 9928179  T
Q  332 gacaaatatcccatacacatccgccatacaagattcttc 370  Q
    | |||| | ||| | |||||||||||| || ||||||||    
T  9928178 ggcaaacagcccctgcacatccgccattcatgattcttc 9928140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 239 - 370
Target Start/End: Complemental strand, 26616907 - 26616776
Alignment:
Q  239 aatataatatgtgcaagatcttcatggttagaactacagctaacgcattctgttgaacattgaacccctttgtcttgaagccgaacttgagtcgacaaat 338  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  26616907 aatataatatttgcaagatcttcatggttagaactacagctaacgcattctgttgaacattgaacccctttgtcttgaagccgaacttgagtcgacaaac 26616808  T
Q  339 atcccatacacatccgccatacaagattcttc 370  Q
    ||||||| ||||||||||||||||||||||||    
T  26616807 atcccattcacatccgccatacaagattcttc 26616776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 86; Significance: 5e-41; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 37 - 301
Target Start/End: Original strand, 12077831 - 12078100
Alignment:
Q  37 aactcattttcattctcccaaagtttaaggtttcgatgcttccttagactccaaagaatagttg-----cgctgaacatgttcctgggataaattttgca 131  Q
    |||||||||||||||| |||| ||||||||||  ||||||||   |||||||||| |||| |||     |  |||||||||||||  ||| |||||||||    
T  12077831 aactcattttcattcttccaatgtttaaggttatgatgcttctagagactccaaaaaataattgtcgtacattgaacatgttcctatgatgaattttgca 12077930  T
Q  132 acaaggaaaatatagcatctatagtcgaatttgtgatgagaaccgtatgatttacctcattccatagtccagccatttgccatacttgcacttcaaaagg 231  Q
    ||||| |||||||||||| ||||| ||| |||||||| |||||| | ||||||||| ||||||| || | |||||||| ||| ||||| ||  ||||| |    
T  12077931 acaagaaaaatatagcatatatagacgagtttgtgataagaaccatgtgatttaccccattccaaagccgagccattttccaaacttgaaccgcaaaaag 12078030  T
Q  232 acaatcaaatataatatgtgcaagatcttcatggttagaactacagctaacgcattctgttgaacattga 301  Q
    |||||||||   |||||||| ||| ||||||||| ||||| |||| |||||||||| ||||| |||||||    
T  12078031 acaatcaaaagcaatatgtgaaaggtcttcatggatagaattacaactaacgcattttgttggacattga 12078100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 104 - 323
Target Start/End: Complemental strand, 20964275 - 20964055
Alignment:
Q  104 tgaacatgttcctgggataaattttgcaacaag-gaaaatatagcatctatagtcgaatttgtgatgagaaccgtatgatttacctcattccatagtcca 202  Q
    ||||||||||| || |||||||||||||||||  ||||||||| |||||| |  |||||| ||||| | ||||| |||||| ||||| ||||| || | |    
T  20964275 tgaacatgttcttgtgataaattttgcaacaaaagaaaatataacatctacaaccgaattagtgataataaccgcatgattaacctcgttccaaagacaa 20964176  T
Q  203 gccatttgccatacttgcacttcaaaaggacaatcaaatataatatgtgcaagatcttcatggttagaactacagctaacgcattctgttgaacattgaa 302  Q
     |||||| | |||| ||||   |||||||||| |||||   |||||||| ||| ||||||||||||||| |||| | ||| ||   ||||| ||||| ||    
T  20964175 accattttctatacctgcaacgcaaaaggacattcaaaagcaatatgtgtaaggtcttcatggttagaattacaacgaacacaagttgttggacattaaa 20964076  T
Q  303 cccctttgtcttgaagccgaa 323  Q
    ||||||| |||||||| ||||    
T  20964075 cccctttatcttgaagacgaa 20964055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 41 - 157
Target Start/End: Complemental strand, 9349096 - 9348975
Alignment:
Q  41 cattttcattctcccaaagtttaaggtttcgatgcttccttagactccaaagaatagttgc-----gctgaacatgttcctgggataaattttgcaacaa 135  Q
    |||||| | ||| |||||||||||||||  |||| ||||  ||||||||||||||||||||     | |||||| ||||||| || ||||||| ||| ||    
T  9349096 cattttaactcttccaaagtttaaggttctgatgtttccgaagactccaaagaatagttgccatacgttgaacaagttcctgtgaaaaattttacaagaa 9348997  T
Q  136 ggaaaatatagcatctatagtc 157  Q
    ||||||||||||||||||||||    
T  9348996 ggaaaatatagcatctatagtc 9348975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 182 - 282
Target Start/End: Original strand, 24409231 - 24409331
Alignment:
Q  182 tttacctcattccatagtccagccatttgccatacttgcacttcaaaaggacaatcaaatataatatgtgcaagatcttcatggttagaactacagctaa 281  Q
    ||||||||| |||| |  || ||||||||| | |||| ||  ||||||||||| | ||| |||||||| |||||||||||||| || ||| |||| ||||    
T  24409231 tttacctcactccaaatacctgccatttgctacacttacatctcaaaaggacactaaaaaataatatgagcaagatcttcatgatttgaattacaactaa 24409330  T
Q  282 c 282  Q
    |    
T  24409331 c 24409331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 94
Target Start/End: Original strand, 25114008 - 25114048
Alignment:
Q  54 ccaaagtttaaggtttcgatgcttccttagactccaaagaa 94  Q
    |||||||||||| ||||||||||||| ||||| ||||||||    
T  25114008 ccaaagtttaagatttcgatgcttccatagacgccaaagaa 25114048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 37 - 143
Target Start/End: Complemental strand, 18552750 - 18552639
Alignment:
Q  37 aactcattttcattctcccaaagtttaaggtttcgatgcttccttagactccaaagaatagttg-----cgctgaacatgttcctgggataaattttgca 131  Q
    |||||||| ||||||||| ||| ||||||||||||||| ||||  |  ||||||||||||| ||     ||||| |||||||| || |||||||||||||    
T  18552750 aactcattctcattctcctaaattttaaggtttcgatgtttccacatgctccaaagaatagctgccatacgctggacatgttcatgtgataaattttgca 18552651  T
Q  132 acaaggaaaata 143  Q
    ||||||||||||    
T  18552650 acaaggaaaata 18552639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 104 - 155
Target Start/End: Complemental strand, 3441817 - 3441766
Alignment:
Q  104 tgaacatgttcctgggataaattttgcaacaaggaaaatatagcatctatag 155  Q
    ||||||||||||||  |||||||||||||||||||||| || ||||||||||    
T  3441817 tgaacatgttcctgatataaattttgcaacaaggaaaagattgcatctatag 3441766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 262
Target Start/End: Complemental strand, 32930646 - 32930566
Alignment:
Q  182 tttacctcattccatagtccagccatttgccatacttgcacttcaaaaggacaatcaaatataatatgtgcaagatcttca 262  Q
    ||||||||| |||| |  |||||||||||||| ||||||| | |||||||||| |  || |||||||| ||||||||||||    
T  32930646 tttacctcactccaaataccagccatttgccacacttgcattacaaaaggacacttcaaaataatatgagcaagatcttca 32930566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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