View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9852_low_25 (Length: 350)
Name: NF9852_low_25
Description: NF9852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9852_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 331
Target Start/End: Complemental strand, 52547401 - 52547073
Alignment:
| Q |
1 |
caacagaaatggtcttacaaggtttgttgcctagcaatgtttcagttggtagaagaaacattgcacaatgtttttcaaaatcgaaaaatgttgttgatac |
100 |
Q |
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| T |
52547401 |
caacagaaatggtcttacaaggtttgttgcctagcaatgtttcagttggtagaagaaacattgcacaatgtttttcaaaatcgaaaaatgttgttgatac |
52547302 |
T |
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| Q |
101 |
ttacttgtgtcatcactaagaaaatgtttaagcataatataatttcttgtttatttttgtgttgaagcattatatgtgtatcattcatttttatatgtga |
200 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52547301 |
ttacttgt--catcactaagaaaatgtttaagcataatataatttcttgtttatttttgtgttgaagcattatatgtgtatcattcatttttatatgtga |
52547204 |
T |
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| Q |
201 |
tttcgcttttcggaaataatgcaacattaagaaattccatttcaattttgttgctggtcagattggtctcaagggtgaaaccttaaaacttcccactgta |
300 |
Q |
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| T |
52547203 |
tttcgcttttcggaaataatgcaacattaagaaattccatttcaattttgttgctggtcagattggtctcaagggtgaaaccttaaaacttcccactgta |
52547104 |
T |
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| Q |
301 |
agtggaagttcatcagttcaatgggtacaag |
331 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
52547103 |
agtggaagttcatcagttcaatgggtacaag |
52547073 |
T |
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