View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9852_low_26 (Length: 337)
Name: NF9852_low_26
Description: NF9852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9852_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 16 - 318
Target Start/End: Original strand, 22922954 - 22923263
Alignment:
| Q |
16 |
aataatagtcaagcaaacaaagatacatttaaaggaacatccttatgtcaagtatattctgacatagatgtaaagtgctctggttcttgactggtaagaa |
115 |
Q |
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| T |
22922954 |
aataataatcaagcaaacaaagatacatttaaaggaacatccttatgtcaagtatgttctgacatagatgtaaagtgttctggttcttgactggtaagaa |
22923053 |
T |
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| Q |
116 |
aacattacactccatgcaccaaatatcatgtcttcg--tcgagtttctaacgccaaatatcctaa----atatcaacttgtaatgacacatcatcaagta |
209 |
Q |
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||| |||||||| ||||||||||||||||||||||| ||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
22923054 |
aactttacactcgatgcaccaaatatcatgtcttcgaatcgagtttccaatgccaaatatcctaaatatatatcaacttgtaatgacacatcatcaagta |
22923153 |
T |
|
| Q |
210 |
aaatcctacactcctttacctggccctcctcccattccaacaatctacgacgccacatccaagcctcgccaccctca-ccccaccctaataaatcatctc |
308 |
Q |
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||||||| |||||||||| |||| |||| |||||| |||||||||||||||||||| |||||||||||||||||||| ||||||| |||||||| ||||| |
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| T |
22923154 |
aaatcctccactcctttaactggtcctcttcccataccaacaatctacgacgccacgtccaagcctcgccaccctcacccccaccttaataaataatctc |
22923253 |
T |
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| Q |
309 |
tgccaatgtc |
318 |
Q |
| |
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|||||||||| |
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| T |
22923254 |
tgccaatgtc |
22923263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 6 - 218
Target Start/End: Complemental strand, 22924068 - 22923854
Alignment:
| Q |
6 |
cctattacgaaataatagtcaagcaaacaaagatacatttaaaggaacatccttatgtcaagtatattctgacatagatgtaaagtgctctggttcttga |
105 |
Q |
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|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |
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| T |
22924068 |
cctattgcggaataatagtcaagcaaacaaagatacatttaaaggaacatccttatgtcaagtatattctgacatcgatgtaaagtgctctcgttcttgg |
22923969 |
T |
|
| Q |
106 |
ctggtaagaaaacattacactccatgcaccaaatatcatgtcttc--gtcgagtttctaacgccaaatatcctaaatatcaacttgtaatgacacatcat |
203 |
Q |
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||||||||||||| ||||||||| | ||||||||||||||| || ||||||||| ||| |||||||||||||||||||||||| ||||||||||||| |
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| T |
22923968 |
ctggtaagaaaactgtacactccacgtaccaaatatcatgtcgtcaaatcgagtttccaacaccaaatatcctaaatatcaacttgcaatgacacatcat |
22923869 |
T |
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| Q |
204 |
caagtaaaatcctac |
218 |
Q |
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|||||||||||||| |
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| T |
22923868 |
gaagtaaaatcctac |
22923854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 291
Target Start/End: Complemental strand, 11527784 - 11527727
Alignment:
| Q |
234 |
cctcctcccattccaacaatctacgacgccacatccaagcctcgccaccctcacccca |
291 |
Q |
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||||||||||| ||||||| ||||| ||||| | || |||||||||||||||||||| |
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| T |
11527784 |
cctcctcccataccaacaacatacgatgccactttcatgcctcgccaccctcacccca |
11527727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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