View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9852_low_27 (Length: 316)
Name: NF9852_low_27
Description: NF9852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9852_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 15 - 308
Target Start/End: Original strand, 53252788 - 53253081
Alignment:
| Q |
15 |
aataattaacttgattaactgttgcaatttgaaggatagactttcaagttcttaaaattcaaagataaaaatgtatgacacattgccattttgatattta |
114 |
Q |
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| T |
53252788 |
aataattaactctactaactgttgcaatttgaaggatagactttcaagttcttaaaattcaaagataaaaatgtatgacacattgccattttgatattta |
53252887 |
T |
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| Q |
115 |
ctcgtgtttatttgactaatttagtggaaattcttaggaagggaaacaaagtgaagatgctgtgagtgagagattgtaaaactgtaatgaatcatacttt |
214 |
Q |
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| T |
53252888 |
ctcgtgtttatttgactaatttagtggaaattcttaggaagggaaacaaagtgaagatgctgtgagtgagagattgtaaaactgtaatgaatcatacttt |
53252987 |
T |
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| Q |
215 |
ataattactactaactcaaaatcttcctagctaccaattttaaatgccatgcaagtttgagtgaaccatcgagacattagtaacttttcttctc |
308 |
Q |
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| T |
53252988 |
ataattactactaactcaaaatcttcctagctaccaattttaaatgccatgcaagtttgagtgaaccatcgagacattactaactttttttctc |
53253081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 60 - 308
Target Start/End: Complemental strand, 25719840 - 25719593
Alignment:
| Q |
60 |
aagttcttaaaattcaaagataaaaatgtatgacacattgccattttgatatttactcgtgtttatttgactaatttagtggaaattcttaggaagggaa |
159 |
Q |
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||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||||| |
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| T |
25719840 |
aagttcttaaaattcaaagataaaaatgtatgacagattaccattttgatatttactcatttttatttaactaatttagtggaaattcttaggaagggaa |
25719741 |
T |
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| Q |
160 |
acaaagtgaagatgctgtgagtgagagattgtaaaactgtaatgaatcatactttataattactactaactcaaaatcttcctagctaccaattttaaat |
259 |
Q |
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|| | |||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
25719740 |
acgatgtgaagatgctgtgagtgagagatagtaaaactataatgaatcatgctttataattactaccaactcaaaatcttcctagctaccaattttaaat |
25719641 |
T |
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| Q |
260 |
gccatgcaagtttgagtgaaccatcgagacattagtaacttttcttctc |
308 |
Q |
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| T |
25719640 |
gtcatccaagtttgagtg-accctcgagacattaataactttttttctc |
25719593 |
T |
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