View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9852_low_3 (Length: 580)
Name: NF9852_low_3
Description: NF9852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9852_low_3 |
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| [»] scaffold0085 (1 HSPs) |
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Alignment Details
Target: scaffold0085 (Bit Score: 488; Significance: 0; HSPs: 1)
Name: scaffold0085
Description:
Target: scaffold0085; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 16 - 564
Target Start/End: Original strand, 52387 - 52935
Alignment:
| Q |
16 |
cataggcgactaaagcttgaaggaaaagcatttaagaaaacagtcccgaggctctttcggtaattgaccattttggatcatatcattggtttgcaacagt |
115 |
Q |
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| T |
52387 |
cataggcgactaaagcttgaaggaaaagcatttaagaaaacagtcccgaggctctttcggtaattgaccattttggatcatatcattggtttgcaacagt |
52486 |
T |
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| Q |
116 |
gacttgcatatagcaaaagtttttgatccggatgtccagcttatcaaattaactggaatgagannnnnnncttctttctttctagtcgtgtcaaatatca |
215 |
Q |
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| T |
52487 |
gacttgcatatagcaaaagtttttgatccggatgtccagcttatcaaattaattggaatgaaatttttttcttctttctttctagtcgtgtcaaatatca |
52586 |
T |
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| Q |
216 |
aaattcaattcttttactatattataatctactatcttttccttcatcaactagtaaccctagaaagttcttacaaacaacaaattcgagtatacactga |
315 |
Q |
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| T |
52587 |
aaattcaattcttttactgtattataatctactatcttttccttcatcaactagtaaccctagaaagttcttccaaacaacaaattcgagtatacactga |
52686 |
T |
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| Q |
316 |
catattttatattttatgttgaacttcgcgatttgctgtttttcaatggaagatcattgtgcaaggattcaaaagaatgcttcctgatatttataataac |
415 |
Q |
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| T |
52687 |
catattttatattttatgttgaacttcgcgatttgctgttttttaatggaagatcattgtgcaaggattcaaaggaatgcttcctgatatttataataat |
52786 |
T |
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| Q |
416 |
attatatagaatacataaaaggaagtaatttgtccgagttttgcttctaaagtagttagatggatgctactaatttatggcttgaatcaacaggaaatag |
515 |
Q |
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| T |
52787 |
attatatataatacataaaaggaagtaatttgtctgagttttgcttctaaagtagtttgatggatgctactaatttatggcttgaatcaacaggaaatag |
52886 |
T |
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| Q |
516 |
tcattcctacacttgtaaattcaattttgttacatatgcaagttgaatg |
564 |
Q |
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| T |
52887 |
tcattcctacacttgtaaattcaattttgttacatatgcaagttgaatg |
52935 |
T |
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Target: chr4 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 354 - 416
Target Start/End: Complemental strand, 52171440 - 52171378
Alignment:
| Q |
354 |
tttttcaatggaagatcattgtgcaaggattcaaaagaatgcttcctgatatttataataaca |
416 |
Q |
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| T |
52171440 |
tttttcaatggaagatcgttgtgcaaggattcaaaggaatgcttccttatatttataataaca |
52171378 |
T |
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