View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9852_low_30 (Length: 281)

Name: NF9852_low_30
Description: NF9852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9852_low_30
NF9852_low_30
[»] scaffold0048 (1 HSPs)
scaffold0048 (153-246)||(43507-43600)
[»] chr8 (2 HSPs)
chr8 (54-108)||(26723488-26723542)
chr8 (54-123)||(4905777-4905846)
[»] chr4 (2 HSPs)
chr4 (57-123)||(6071828-6071894)
chr4 (77-123)||(50234983-50235029)
[»] chr3 (2 HSPs)
chr3 (77-123)||(840625-840671)
chr3 (63-108)||(36755343-36755388)


Alignment Details
Target: scaffold0048 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 153 - 246
Target Start/End: Complemental strand, 43600 - 43507
Alignment:
Q  153 ttcttgtaaagccaaaacctccgccctttccctcttaaccaactccaacaccttatgcctcttcacgctactccccaacccccttatattaaaa 246  Q
    ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43600 ttcttgtaaagccaaaacctctgccctttccctcctaaccaactccaacaccttatgcctcttcacgctactccccaacccccttatattaaaa 43507  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 54 - 108
Target Start/End: Complemental strand, 26723542 - 26723488
Alignment:
Q  54 ttttgtgggatccacttggaaagatggcagtgtgtgattggataatgaaggatgt 108  Q
    |||||||||| |||||| || ||||||||||||||||||| ||||||||||||||    
T  26723542 ttttgtgggacccacttagacagatggcagtgtgtgattgaataatgaaggatgt 26723488  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 54 - 123
Target Start/End: Original strand, 4905777 - 4905846
Alignment:
Q  54 ttttgtgggatccacttggaaagatggcagtgtgtgattggataatgaaggatgtatataaagtggtatg 123  Q
    |||||||||| ||||||  | |||| |||||||||||||| |||||||||| ||| |||| |||||||||    
T  4905777 ttttgtgggacccacttaaacagatagcagtgtgtgattgaataatgaagggtgtgtatagagtggtatg 4905846  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 57 - 123
Target Start/End: Original strand, 6071828 - 6071894
Alignment:
Q  57 tgtgggatccacttggaaagatggcagtgtgtgattggataatgaaggatgtatataaagtggtatg 123  Q
    ||||||| |||||| || ||||||||||||||||||| |||||||| | ||| ||||||||||||||    
T  6071828 tgtgggacccacttagacagatggcagtgtgtgattgaataatgaaaggtgtgtataaagtggtatg 6071894  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 77 - 123
Target Start/End: Complemental strand, 50235029 - 50234983
Alignment:
Q  77 atggcagtgtgtgattggataatgaaggatgtatataaagtggtatg 123  Q
    |||||||||||||||||||||||||||| ||||| ||||||||||||    
T  50235029 atggcagtgtgtgattggataatgaagggtgtatgtaaagtggtatg 50234983  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 77 - 123
Target Start/End: Original strand, 840625 - 840671
Alignment:
Q  77 atggcagtgtgtgattggataatgaaggatgtatataaagtggtatg 123  Q
    |||||||||||||||||||||||||| | ||||| ||||||||||||    
T  840625 atggcagtgtgtgattggataatgaaaggtgtatgtaaagtggtatg 840671  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 63 - 108
Target Start/End: Original strand, 36755343 - 36755388
Alignment:
Q  63 atccacttggaaagatggcagtgtgtgattggataatgaaggatgt 108  Q
    ||||||||||| |||||||| ||| |||||||||||||||||||||    
T  36755343 atccacttggacagatggcaatgtatgattggataatgaaggatgt 36755388  T

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