View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9852_low_35 (Length: 249)
Name: NF9852_low_35
Description: NF9852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9852_low_35 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 4751376 - 4751608
Alignment:
| Q |
1 |
cattttctctcttgaagcaaacaggagaaaacttcaatttcctcccagtttctcttgtatcaaacaatgtgttagtgaataaaataaacatgcaagtctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4751376 |
cattttctctcttgaagcaaacaggagaaaacttcaatttcctcccagtttctcttgtatcaaacaatgtgttagtgaataaaataaacatgcaagtctt |
4751475 |
T |
|
| Q |
101 |
aattgtgctatggattctaggcagcactaagcatcaaatggatccagaaagaaataagtatcactgtggtttgttctaacataatgtcttaaatttttat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
4751476 |
aattgtgctatggattctaggcagcactaagcatcaaatggatccagaaagaaataagtatcaccgtggtttgttctaacgtaatgtcttaaatttttat |
4751575 |
T |
|
| Q |
201 |
catttccaagtaccacaaagcaccgcatttgat |
233 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
4751576 |
catttccaagtaccacaaagcaccgcatttgat |
4751608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University