View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9852_low_37 (Length: 244)
Name: NF9852_low_37
Description: NF9852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9852_low_37 |
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Alignment Details
Target: chr2 (Bit Score: 116; Significance: 4e-59; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 8 - 163
Target Start/End: Original strand, 12743432 - 12743586
Alignment:
| Q |
8 |
ttgtgttcatgaaaacaatgttgtattcgatctctcacataacatttacatgtgttttactactacgttgtgttctcgtgactattagcaagtaattgca |
107 |
Q |
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| T |
12743432 |
ttgtgttcatgaaaacaatgttgtattcgatctttcgcataacatttacatgtgttttactactacgttgtgttctcgtgactatcagcaagtaattgca |
12743531 |
T |
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| Q |
108 |
tttccatgtgtgttttttacatacataaataactaaattaatgtcacacgagatct |
163 |
Q |
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| T |
12743532 |
tttgcatgtgtatttttttcatacataaataact-aattagtgtcacatgagatct |
12743586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 9 - 175
Target Start/End: Complemental strand, 12755328 - 12755174
Alignment:
| Q |
9 |
tgtgttcatgaaaacaatgttgtattcgatctctcacataacatttacatgtgttttactactacgttgtgttctcgtgactattagcaagtaattgcat |
108 |
Q |
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| T |
12755328 |
tgtgttcataaaaacaatgttgtattcgatctctcacattacatttacatgtgttttactactacgttgtgttctcgtgactataagaaagtaattgc-- |
12755231 |
T |
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| Q |
109 |
ttccatgtgtgttttttacatacataaataactaaattaatgtcacacgagatctaaacgattttca |
175 |
Q |
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| T |
12755230 |
--------gtgtttttt-catacataaataact-aattagtgtcacatgagatctacacgatcttca |
12755174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 204
Target Start/End: Original strand, 12743617 - 12743649
Alignment:
| Q |
172 |
ttcatacacatgcaaatcgaactatagccatgg |
204 |
Q |
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| T |
12743617 |
ttcacacacatgcaaatcgaactatagccatgg |
12743649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 204
Target Start/End: Complemental strand, 12755146 - 12755114
Alignment:
| Q |
172 |
ttcatacacatgcaaatcgaactatagccatgg |
204 |
Q |
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| T |
12755146 |
ttcacacacatgcaaatcgaactatagccatgg |
12755114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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