View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9852_low_39 (Length: 243)
Name: NF9852_low_39
Description: NF9852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9852_low_39 |
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Alignment Details
Target: chr6 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 16 - 211
Target Start/End: Original strand, 34933957 - 34934152
Alignment:
| Q |
16 |
caattgaaacattctcattttggaaaacgacattggttcacacgtcgttcaaacttgtgttgcattttagtgcttatttcgtcaatccaaacacggtcta |
115 |
Q |
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| T |
34933957 |
caattgaaacattctcattttggaaaacgacattggttcacgcgtcgttcaaacttgtgttgcattttagtgcttatttcgtcaatccaaacacggtcta |
34934056 |
T |
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| Q |
116 |
tcctacatcaaattgtttatcactatcatatgtagtggttcagtttttattgaagttagctgtgtgttttgacttttaatttcattgtcatcgatc |
211 |
Q |
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| T |
34934057 |
tcctacatcaaattgtttatcactatcatatgtagtggttcagtttttattgaagttggctgtgtgttttgacttttaatttcattgtcatcgatc |
34934152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 34 - 211
Target Start/End: Original strand, 34927394 - 34927571
Alignment:
| Q |
34 |
tttggaaaacgacattggttcacacgtcgttcaaacttgtgttgcattttagtgcttatttcgtcaatccaaacacggtctatcctacatcaaattgttt |
133 |
Q |
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|||||||||| || ||||||||| | || ||||| |||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |
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| T |
34927394 |
tttggaaaacaacgttggttcacgctacgctcaaatttgtgttgcattttagtgcttatttcctcaaaccaaacacggtctatcctacatcaaattgttt |
34927493 |
T |
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| Q |
134 |
atcactatcatatgtagtggttcagtttttattgaagttagctgtgtgttttgacttttaatttcattgtcatcgatc |
211 |
Q |
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| T |
34927494 |
ttcactatcatatgtagtggttcagttttccttgaaattcgctgtgtgctttgagttttaatttcattttcatcgatc |
34927571 |
T |
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