View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9852_low_4 (Length: 561)
Name: NF9852_low_4
Description: NF9852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9852_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 362; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 187 - 556
Target Start/End: Original strand, 29931543 - 29931912
Alignment:
| Q |
187 |
acgattgacactcactgaagcaaagtgattgacatccctatgatgagcctcatcagcacgaataacagtgataacatccttaagagttgcatccttagga |
286 |
Q |
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| T |
29931543 |
acgattgacactcaccgaagcaaagtgattgacatccctatgatgagcctcatcagcacgaataacagtgataacatccttaagagttgcatccttagga |
29931642 |
T |
|
| Q |
287 |
agtctccaataatcaattgcaatagcaggagcaggtacattttcaactttaccactctcaattgcattcaaatgttgtgtatatgaaatcacagcttcct |
386 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29931643 |
agtctccaataatcaattgcaatagcaggagcaggtacattttcaactttaccactctcaattgcattcaaatgttgtgtatatgaaatcacagcttcct |
29931742 |
T |
|
| Q |
387 |
cctctaaataaccaacaaacctgtgtgcagtttttggtgagaggatgtaaaaaacaaagaatgcattgaagaaaactccttgtgcagtaataaccaaaag |
486 |
Q |
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| T |
29931743 |
cctctaaataaccaacaaacctgtgtgcagtttttggtgagagtatgtaaaaaacaaagaatgcattgaagaaaactccttgtgcagtaataaccaaaag |
29931842 |
T |
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| Q |
487 |
cctttcatgccaacttggttttacaagctctaccattgtcatcaaatgcatcctctcattctctgcttct |
556 |
Q |
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| T |
29931843 |
cctttcatgccaacttggttttacaagctctaccattgtcatcaaatgcatcctctcattctctgcttct |
29931912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 203 - 556
Target Start/End: Original strand, 29934283 - 29934636
Alignment:
| Q |
203 |
gaagcaaagtgattgacatccctatgatgagcctcatcagcacgaataacagtgataacatccttaagagttgcatccttaggaagtctccaataatcaa |
302 |
Q |
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| T |
29934283 |
gaagcaaagtgattgacatccctatgatgagcctcatcagcacgaataacagtgacaacatccttaagagttgcatcatttggaagtctccaataatcaa |
29934382 |
T |
|
| Q |
303 |
ttgcaatagcaggagcaggtacattttcaactttaccactctcaattgcattcaaatgttgtgtatatgaaatcacagcttcctcctctaaataaccaac |
402 |
Q |
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| |||||||||||||||||||||||||||||||||||||| ||||||||||||| || |||||| ||||||||||||||||||||||||||||||||||| |
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| T |
29934383 |
tagcaatagcaggagcaggtacattttcaactttaccactttcaattgcattcagatattgtgtgtatgaaatcacagcttcctcctctaaataaccaac |
29934482 |
T |
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| Q |
403 |
aaacctgtgtgcagtttttggtgagaggatgtaaaaaacaaagaatgcattgaagaaaactccttgtgcagtaataaccaaaagcctttcatgccaactt |
502 |
Q |
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| T |
29934483 |
aaacctatgtgctatttttggtgagaggatgtaaaacacaaagaatccattaaagaaaacaccttgtgcagtaataaccaaaagcctctcatgccaactt |
29934582 |
T |
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| Q |
503 |
ggttttacaagctctaccattgtcatcaaatgcatcctctcattctctgcttct |
556 |
Q |
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||||| |||||||| ||||||||||||||||||||||| ||||||||||||||| |
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| T |
29934583 |
ggtttcacaagctcaaccattgtcatcaaatgcatcctttcattctctgcttct |
29934636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 18 - 136
Target Start/End: Original strand, 29931374 - 29931492
Alignment:
| Q |
18 |
acattcagagcaaatgaagaggaaagaaattaaaatcaagagtgttttaaacaaattataatgacttaaaaatgtttttcatccnnnnnnnagactaaga |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |
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| T |
29931374 |
acattcagagcaaatgaagaggaaagaaattaaaatcaagagtgttttaaacaaattataatgacttaaaaaagtttttcatcctttttttagactaaga |
29931473 |
T |
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| Q |
118 |
tgatatatttatagagacg |
136 |
Q |
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| T |
29931474 |
taatatatttatagagacg |
29931492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 194 - 332
Target Start/End: Complemental strand, 37469856 - 37469718
Alignment:
| Q |
194 |
acactcactgaagcaaagtgattgacatccctatgatgagcctcatcagcacgaataacagtgataacatccttaagagttgcatccttaggaagtctcc |
293 |
Q |
| |
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|||||||||||||| || || || ||||||| ||| |||||||| ||||||||||| || || |||||||| || | | |||||||| ||||| |||| |
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| T |
37469856 |
acactcactgaagcgaaatggttcacatcccgatggtgagcctcgtcagcacgaatgactgttataacatctttcaatttggcatccttgggaagcctcc |
37469757 |
T |
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| Q |
294 |
aataatcaattgcaatagcaggagcaggtacattttcaa |
332 |
Q |
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|||| || |||||||| ||||||||||| |||||||||| |
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| T |
37469756 |
aatagtctattgcaatggcaggagcaggaacattttcaa |
37469718 |
T |
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