View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9852_low_40 (Length: 242)
Name: NF9852_low_40
Description: NF9852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9852_low_40 |
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Alignment Details
Target: chr1 (Bit Score: 163; Significance: 4e-87; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 26616773 - 26616556
Alignment:
| Q |
1 |
ctttggatgaactttcaacctccaaatacccatccaaaaccccggacgccgcaaatggaaagtctcaactaactcatcaacacacaacctatatgtacta |
100 |
Q |
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| T |
26616773 |
ctttggatgaactttcaacctccaaatacccatccaaaaccccggacgccgcaaatgggaagtctcaactaactcatcaacacacaacctgtatatatta |
26616674 |
T |
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| Q |
101 |
cagacaaaacacataatgtttttctctgccttccaaaccatatgatcattagggacttgattaatcaacggggtttgaagaatagtagatgctatgtcct |
200 |
Q |
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| T |
26616673 |
cagacaaaatacatactattttt-------ttccaaaccatatgatcattagggacttgattaatcaacggggtttaaagaataatagatgctatgtcct |
26616581 |
T |
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| Q |
201 |
cattaaatacttgcatcaccaaatc |
225 |
Q |
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| T |
26616580 |
cattaaatacttgcatcaccaaatc |
26616556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 35 - 225
Target Start/End: Complemental strand, 9928115 - 9927925
Alignment:
| Q |
35 |
caaaaccccggacgccgcaaatggaaagtctcaactaactcatcaacacacaacctatatgtactacagacaaaacacataatgtttttctctgccttcc |
134 |
Q |
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|||||||| |||||||||||||| |||| | ||||||| |||||||| |||| || || | ||| | |||| || ||||| |||||||||||| ||| |
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| T |
9928115 |
caaaaccctggacgccgcaaatgcgaagtgttaactaacacatcaacagacaaactgtaggaactgcggacataatacataccgtttttctctgctttca |
9928016 |
T |
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| Q |
135 |
aaaccatatgatcattagggacttgattaatcaacggggtttgaagaatagtagatgctatgtcctcattaaatacttgcatcaccaaatc |
225 |
Q |
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| T |
9928015 |
aaatcatatgatcattagggacttgattgatcaacggggtttaaagaatagtagatgttatgtcctcactaaacacttgcctcaccaaatc |
9927925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 9 - 115
Target Start/End: Complemental strand, 35150362 - 35150256
Alignment:
| Q |
9 |
gaactttcaacctccaaatacccatccaaaaccccggacgccgcaaatggaaagtctcaactaactcatcaacacacaacctatatgtactacagacaaa |
108 |
Q |
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|||||||||||||||||||| | |||||| |||||| |||||||| ||| |||| |||||||||||||||||||||||| | |||| |||||||||| | |
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| T |
35150362 |
gaactttcaacctccaaataatcgtccaaacccccgggcgccgcaagtgggaagtgtcaactaactcatcaacacacaacatgtatgcactacagacaga |
35150263 |
T |
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| Q |
109 |
acacata |
115 |
Q |
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| T |
35150262 |
atacata |
35150256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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