View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9852_low_48 (Length: 206)
Name: NF9852_low_48
Description: NF9852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9852_low_48 |
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Alignment Details
Target: chr6 (Bit Score: 59; Significance: 3e-25; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 38 - 112
Target Start/End: Complemental strand, 34934388 - 34934314
Alignment:
| Q |
38 |
aatcaaatctcaaagactatctaatagactgcaatgtctattatggtacaaactaataactgattaggtccaaac |
112 |
Q |
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| T |
34934388 |
aatcaaatctcaaagactatctaatagactgctgggtctattatggtgcaaactaataactgattaggtccaaac |
34934314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 161 - 205
Target Start/End: Complemental strand, 34927900 - 34927856
Alignment:
| Q |
161 |
atttaatcatagcaagtttactcagaaaatatgcacaaaaacata |
205 |
Q |
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| T |
34927900 |
atttaatcatagcaagtttactcataaaatatgcacaaaaacata |
34927856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 160 - 200
Target Start/End: Complemental strand, 34934266 - 34934226
Alignment:
| Q |
160 |
catttaatcatagcaagtttactcagaaaatatgcacaaaa |
200 |
Q |
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| T |
34934266 |
catttaatcatagcaagtttactcagaaaatatgcacaaaa |
34934226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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