View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9852_low_6 (Length: 554)
Name: NF9852_low_6
Description: NF9852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9852_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 380; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 94 - 547
Target Start/End: Original strand, 15123269 - 15123738
Alignment:
| Q |
94 |
ttattaattaaagcgacactaatgatcattttacgatcatcctcgctaacatgagctagcaccttcataataaataggagactgttttgttataatatgt |
193 |
Q |
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| T |
15123269 |
ttattaattaaagcgacactaatgatcattttatgatcatcctcgctaacatgagctagcaccttcataataaataggagactgttttgttataatatgt |
15123368 |
T |
|
| Q |
194 |
ggttcacaacgctaggtaataatcactgctcttgagtctgttatgctgaggtgaggagttaacacaaatcattcaaattcaagctccaaaaatggctaac |
293 |
Q |
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| T |
15123369 |
ggttcacaactctaggtaataatcactgctcttgagtctgttatgctgaggtgaggagttaacacaaatcattcaaattcaagctccaaaaatggctaac |
15123468 |
T |
|
| Q |
294 |
ttttggatttcaattggtaactttgcttctttttcactctttagtatcatgtaacttatgtaatagttccatgnnnnnnngcaccatttgaattatgtat |
393 |
Q |
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| T |
15123469 |
ttttggatttcaattggtaactttgcttctttttcactctttagtatcatgtaacttatgtaatagttccatgtttttttgcaccatttgaattatgtat |
15123568 |
T |
|
| Q |
394 |
gtcacaactattcaacc----------------ttttattaatttaatatgcaggtgaaatttcatggacttgtcttaagaagtttgatttaaattcttt |
477 |
Q |
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| T |
15123569 |
gtcacaactattcaaccttttattaatttagtattttattaatttaatatgcaggtgaaatttcatggacttgtcttaagaagtttgatttaaattcttt |
15123668 |
T |
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| Q |
478 |
atgttctcaaagaagcttagtagacacaatcaacatactctttctctgtggctactacacatctctgctt |
547 |
Q |
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| T |
15123669 |
atgttctcaaagaagcttagtagacacaatcaacatactctttctctgtgtctactacacatctttgctt |
15123738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 427 - 541
Target Start/End: Complemental strand, 5292720 - 5292606
Alignment:
| Q |
427 |
tgcaggtgaaatttcatggacttgtcttaagaagtttgatttaaattctttatgttctcaaagaagcttagtagacacaatcaacatactctttctctgt |
526 |
Q |
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|||||||||||||||||||| |||| | ||||| || ||||| |||||||||||||||||||| |||||| ||||||| ||||| ||||||||| | ||| |
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| T |
5292720 |
tgcaggtgaaatttcatggatttgtttgaagaatttcgatttcaattctttatgttctcaaaggagcttaatagacactatcaatatactctttgtatgt |
5292621 |
T |
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| Q |
527 |
ggctactacacatct |
541 |
Q |
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| ||| | ||||||| |
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| T |
5292620 |
gtctattgcacatct |
5292606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 15123194 - 15123244
Alignment:
| Q |
18 |
actcgtaacaattattctaatctcgtatgttaataaataggagactttttt |
68 |
Q |
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| T |
15123194 |
actcgtaacaattattctaatctcgtatgttaataaataggagactttttt |
15123244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 94 - 134
Target Start/End: Original strand, 2364025 - 2364065
Alignment:
| Q |
94 |
ttattaattaaagcgacactaatgatcattttacgatcatc |
134 |
Q |
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| T |
2364025 |
ttattaattaaagtgacactaatgatcattttacaatcatc |
2364065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 94 - 133
Target Start/End: Original strand, 4473617 - 4473656
Alignment:
| Q |
94 |
ttattaattaaagcgacactaatgatcattttacgatcat |
133 |
Q |
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||||||||||||| |||| ||||||||||||||||||||| |
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| T |
4473617 |
ttattaattaaagtgacagtaatgatcattttacgatcat |
4473656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 329
Target Start/End: Complemental strand, 14952250 - 14952177
Alignment:
| Q |
256 |
cacaaatcattcaaattcaagctccaaaaatggctaacttttggatttcaattggtaactttgcttctttttca |
329 |
Q |
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|||||| ||||||||||||||||||||||||| || ||||| | |||| |||||||||| |||||||||| |
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| T |
14952250 |
cacaaaccattcaaattcaagctccaaaaatgacttactttaacaacacaataggtaactttgattctttttca |
14952177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 264 - 296
Target Start/End: Complemental strand, 5293025 - 5292993
Alignment:
| Q |
264 |
attcaaattcaagctccaaaaatggctaacttt |
296 |
Q |
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| T |
5293025 |
attcaaattcaagctccaaaaatggcttacttt |
5292993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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