View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9853_high_16 (Length: 250)

Name: NF9853_high_16
Description: NF9853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9853_high_16
NF9853_high_16
[»] chr7 (37 HSPs)
chr7 (96-240)||(17904163-17904307)
chr7 (95-240)||(26770178-26770323)
chr7 (96-240)||(29427297-29427441)
chr7 (89-240)||(46467468-46467619)
chr7 (95-240)||(37179465-37179609)
chr7 (95-240)||(6389731-6389876)
chr7 (96-240)||(6387825-6387969)
chr7 (104-240)||(9876271-9876407)
chr7 (96-240)||(29890959-29891103)
chr7 (96-240)||(41921987-41922131)
chr7 (96-240)||(4405109-4405253)
chr7 (100-219)||(31503091-31503210)
chr7 (1-97)||(243339-243435)
chr7 (96-205)||(19523863-19523974)
chr7 (99-195)||(9332364-9332460)
chr7 (111-238)||(33974506-33974636)
chr7 (96-240)||(12252069-12252216)
chr7 (116-240)||(9215595-9215722)
chr7 (96-211)||(29722955-29723070)
chr7 (96-211)||(43701551-43701666)
chr7 (111-240)||(46689878-46690011)
chr7 (96-240)||(31858225-31858371)
chr7 (95-211)||(33379130-33379245)
chr7 (111-173)||(49011058-49011120)
chr7 (96-241)||(33915717-33915863)
chr7 (154-240)||(48049057-48049146)
chr7 (116-240)||(5514797-5514923)
chr7 (93-129)||(29723381-29723417)
chr7 (93-129)||(37179328-37179364)
chr7 (96-129)||(4405353-4405386)
chr7 (96-129)||(17904407-17904440)
chr7 (96-129)||(29890826-29890859)
chr7 (96-128)||(46467335-46467367)
chr7 (94-129)||(6387690-6387725)
chr7 (35-97)||(1910969-1911031)
chr7 (186-240)||(22753201-22753257)
chr7 (96-128)||(26770424-26770456)
[»] chr8 (24 HSPs)
chr8 (96-240)||(33837862-33838006)
chr8 (96-240)||(2508929-2509073)
chr8 (96-240)||(28378947-28379091)
chr8 (96-240)||(45334409-45334553)
chr8 (101-226)||(13469652-13469777)
chr8 (96-240)||(25106211-25106355)
chr8 (94-240)||(38495605-38495751)
chr8 (96-240)||(9739985-9740129)
chr8 (96-219)||(27793345-27793468)
chr8 (140-240)||(2626371-2626472)
chr8 (96-240)||(32183614-32183759)
chr8 (96-165)||(27024433-27024502)
chr8 (96-163)||(25978969-25979036)
chr8 (96-211)||(8235162-8235276)
chr8 (131-211)||(3203413-3203492)
chr8 (93-129)||(33837726-33837762)
chr8 (111-158)||(2626667-2626714)
chr8 (95-128)||(9740231-9740264)
chr8 (96-129)||(25106455-25106488)
chr8 (96-129)||(27027655-27027688)
chr8 (96-129)||(28379191-28379224)
chr8 (96-129)||(45334276-45334309)
chr8 (94-129)||(38495470-38495505)
chr8 (96-128)||(13469508-13469540)
[»] chr6 (16 HSPs)
chr6 (96-240)||(27312249-27312393)
chr6 (96-240)||(32274434-32274578)
chr6 (98-240)||(8504835-8504977)
chr6 (103-240)||(5003889-5004026)
chr6 (96-240)||(29452675-29452820)
chr6 (96-198)||(12174700-12174802)
chr6 (95-240)||(31171123-31171268)
chr6 (93-211)||(18741944-18742062)
chr6 (157-240)||(2543142-2543225)
chr6 (96-240)||(7156370-7156502)
chr6 (96-144)||(29302500-29302548)
chr6 (96-129)||(8504733-8504766)
chr6 (96-129)||(27312114-27312147)
chr6 (96-129)||(2543325-2543358)
chr6 (96-129)||(32274678-32274711)
chr6 (96-128)||(18742191-18742223)
[»] chr5 (24 HSPs)
chr5 (96-240)||(12399079-12399223)
chr5 (96-240)||(34208538-34208682)
chr5 (96-240)||(29874954-29875098)
chr5 (96-240)||(23090298-23090442)
chr5 (96-240)||(4145694-4145838)
chr5 (94-240)||(4695295-4695441)
chr5 (96-235)||(3077597-3077736)
chr5 (111-230)||(42757953-42758072)
chr5 (161-240)||(22646042-22646121)
chr5 (111-211)||(12096365-12096466)
chr5 (96-211)||(41610579-41610694)
chr5 (94-165)||(42793038-42793109)
chr5 (99-163)||(4434783-4434847)
chr5 (94-129)||(12398944-12398979)
chr5 (117-240)||(22528023-22528149)
chr5 (95-129)||(42757804-42757838)
chr5 (96-129)||(29875198-29875231)
chr5 (96-129)||(42793562-42793595)
chr5 (96-128)||(23090543-23090575)
chr5 (96-128)||(41610373-41610405)
chr5 (96-207)||(19574686-19574795)
chr5 (111-145)||(594328-594362)
chr5 (99-165)||(8718028-8718094)
chr5 (96-129)||(34208782-34208815)
[»] chr3 (35 HSPs)
chr3 (96-240)||(18996967-18997111)
chr3 (96-240)||(18999506-18999650)
chr3 (96-240)||(29371671-29371815)
chr3 (96-240)||(32677610-32677754)
chr3 (96-240)||(39528749-39528893)
chr3 (96-239)||(1352130-1352273)
chr3 (96-240)||(41349504-41349648)
chr3 (86-240)||(28228426-28228580)
chr3 (96-240)||(39807112-39807256)
chr3 (96-240)||(55365908-55366052)
chr3 (99-240)||(21974152-21974293)
chr3 (99-240)||(21996583-21996724)
chr3 (96-240)||(36737967-36738111)
chr3 (102-240)||(38855323-38855461)
chr3 (99-240)||(22157261-22157402)
chr3 (103-231)||(29014832-29014960)
chr3 (111-240)||(39518422-39518551)
chr3 (94-240)||(32839947-32840092)
chr3 (111-240)||(49040977-49041107)
chr3 (93-165)||(49319344-49319416)
chr3 (94-129)||(1351994-1352029)
chr3 (95-129)||(39528993-39529027)
chr3 (96-129)||(18997211-18997244)
chr3 (96-129)||(18999750-18999783)
chr3 (96-129)||(29014690-29014723)
chr3 (96-129)||(36737834-36737867)
chr3 (96-129)||(38855561-38855594)
chr3 (96-129)||(39518651-39518684)
chr3 (96-129)||(41349371-41349404)
chr3 (96-128)||(46878980-46879012)
chr3 (121-208)||(837370-837455)
chr3 (96-129)||(29371538-29371571)
chr3 (96-129)||(32677477-32677510)
chr3 (96-129)||(39806979-39807012)
chr3 (102-202)||(34667662-34667762)
[»] chr1 (30 HSPs)
chr1 (94-239)||(46220257-46220402)
chr1 (96-240)||(47669119-47669263)
chr1 (96-240)||(10737834-10737978)
chr1 (96-234)||(4817269-4817407)
chr1 (95-240)||(9831502-9831647)
chr1 (89-240)||(18126844-18126994)
chr1 (95-240)||(3384728-3384871)
chr1 (96-232)||(4055484-4055620)
chr1 (96-240)||(48564818-48564961)
chr1 (111-235)||(8889457-8889581)
chr1 (97-240)||(7414208-7414351)
chr1 (96-198)||(1236205-1236307)
chr1 (116-240)||(39241172-39241296)
chr1 (93-165)||(33020203-33020275)
chr1 (96-175)||(1749521-1749600)
chr1 (119-211)||(26842462-26842552)
chr1 (96-211)||(33846820-33846935)
chr1 (96-211)||(33947043-33947158)
chr1 (153-224)||(37875849-37875920)
chr1 (96-129)||(10737701-10737734)
chr1 (96-129)||(46220503-46220536)
chr1 (96-129)||(47669363-47669396)
chr1 (97-129)||(1236071-1236103)
chr1 (96-127)||(48565063-48565094)
chr1 (111-211)||(49112439-49112535)
chr1 (99-129)||(9831747-9831777)
chr1 (96-129)||(8889687-8889720)
chr1 (96-129)||(33023428-33023461)
chr1 (96-129)||(37875727-37875760)
chr1 (35-79)||(51776549-51776593)
[»] chr2 (15 HSPs)
chr2 (98-240)||(15233757-15233899)
chr2 (96-240)||(43040982-43041126)
chr2 (96-240)||(35793040-35793183)
chr2 (96-240)||(41252415-41252559)
chr2 (96-234)||(31296083-31296221)
chr2 (93-239)||(44104683-44104836)
chr2 (96-240)||(41642891-41643038)
chr2 (111-240)||(31903513-31903641)
chr2 (96-165)||(10118660-10118729)
chr2 (111-233)||(21727684-21727809)
chr2 (94-129)||(43040847-43040882)
chr2 (96-129)||(10112339-10112372)
chr2 (96-129)||(15233999-15234032)
chr2 (96-165)||(36963131-36963200)
chr2 (96-128)||(44104546-44104578)
[»] chr4 (20 HSPs)
chr4 (96-240)||(45590742-45590886)
chr4 (96-240)||(8955909-8956053)
chr4 (106-240)||(34334342-34334476)
chr4 (96-240)||(33288538-33288682)
chr4 (102-240)||(49162108-49162245)
chr4 (94-240)||(18835703-18835851)
chr4 (96-188)||(30469353-30469445)
chr4 (99-195)||(39481906-39482002)
chr4 (111-240)||(50774191-50774325)
chr4 (162-240)||(36971115-36971192)
chr4 (96-165)||(19256186-19256255)
chr4 (111-211)||(26025685-26025784)
chr4 (96-146)||(36016279-36016329)
chr4 (111-165)||(36968353-36968407)
chr4 (111-240)||(33109031-33109163)
chr4 (96-130)||(19257103-19257137)
chr4 (99-129)||(8955779-8955809)
chr4 (96-129)||(45590986-45591019)
chr4 (96-129)||(49162332-49162365)
chr4 (97-129)||(39482106-39482138)
[»] scaffold0103 (1 HSPs)
scaffold0103 (96-240)||(44619-44764)


Alignment Details
Target: chr7 (Bit Score: 141; Significance: 5e-74; HSPs: 37)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 96 - 240
Target Start/End: Original strand, 17904163 - 17904307
Alignment:
Q  96 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  17904163 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaagtttacc 17904262  T
Q  196 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  17904263 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 17904307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 95 - 240
Target Start/End: Original strand, 26770178 - 26770323
Alignment:
Q  95 gtactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttac 194  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  26770178 gtactccctccattccttttcttttgatgttttagaacttcaactaaattccaaaacttttgatgttttagtgaatttattattgttttctcaagtttac 26770277  T
Q  195 ccttgttggaaaacacaataaactattaaagtagttgtgacctttg 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  26770278 ccttgttggaaaacacaataaactattaaagtagttgtgacctttg 26770323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 96 - 240
Target Start/End: Complemental strand, 29427441 - 29427297
Alignment:
Q  96 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  29427441 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaagtttacc 29427342  T
Q  196 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 240  Q
    ||||||||||||||||||||||||||||||||||||||| |||||    
T  29427341 cttgttggaaaacacaataaactattaaagtagttgtgatctttg 29427297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 89 - 240
Target Start/End: Complemental strand, 46467619 - 46467468
Alignment:
Q  89 tatgaagtactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaa 188  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  46467619 tatgtagtactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaa 46467520  T
Q  189 gtttacccttgttggaaaacacaataaactattaaagtagttgtgacctttg 240  Q
    ||||||| ||||||||||||||||||||||||||||||||||| ||||||||    
T  46467519 gtttacctttgttggaaaacacaataaactattaaagtagttgcgacctttg 46467468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 95 - 240
Target Start/End: Complemental strand, 37179609 - 37179465
Alignment:
Q  95 gtactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttac 194  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||    
T  37179609 gtactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttct-aagtttac 37179511  T
Q  195 ccttgttggaaaacacaataaactattaaagtagttgtgacctttg 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  37179510 ccttgttggaaaacacaataaactattaaagtagttgtgacctttg 37179465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 95 - 240
Target Start/End: Original strand, 6389731 - 6389876
Alignment:
Q  95 gtactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttac 194  Q
    ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  6389731 gtactccctccattcattttgttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaagtttac 6389830  T
Q  195 ccttgttggaaaacacaataaactattaaagtagttgtgacctttg 240  Q
     |||||||||||||||||||||||||||||||||||||||| ||||    
T  6389831 tcttgttggaaaacacaataaactattaaagtagttgtgacatttg 6389876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 96 - 240
Target Start/End: Complemental strand, 6387969 - 6387825
Alignment:
Q  96 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 195  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||    
T  6387969 tactccctccattccttttcttttgatgttttagaactgcaactatattccaaaacttttgatgttttagtgaatttgttattgttttatcaagtttacc 6387870  T
Q  196 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 240  Q
    |||||||||||||||||||||||||||||||||||||||| ||||    
T  6387869 cttgttggaaaacacaataaactattaaagtagttgtgacatttg 6387825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 104 - 240
Target Start/End: Original strand, 9876271 - 9876407
Alignment:
Q  104 ccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacccttgttgg 203  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  9876271 ccattccttttcttttgatgttttaaaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaattttacccttgttgg 9876370  T
Q  204 aaaacacaataaactattaaagtagttgtgacctttg 240  Q
    ||||||| |||||||||||||||||||||||||||||    
T  9876371 aaaacaccataaactattaaagtagttgtgacctttg 9876407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 96 - 240
Target Start/End: Complemental strand, 29891103 - 29890959
Alignment:
Q  96 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 195  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||| |    
T  29891103 tactccctccattccttttcttttgatgttttaaaacttcaactatattccaaaatttttgatgttttagtgaatttatgattgttttctcaagtttatc 29891004  T
Q  196 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 240  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||    
T  29891003 cttgatggaaaacacaataaactattaaagtagttgtgacttttg 29890959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 96 - 240
Target Start/End: Complemental strand, 41922131 - 41921987
Alignment:
Q  96 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 195  Q
    ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |||||||||||    
T  41922131 tactccctctatttcttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttaatattgttttatcaagtttacc 41922032  T
Q  196 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 240  Q
    ||||||| ||||||||||||||||||||||||||||  |||||||    
T  41922031 cttgttgaaaaacacaataaactattaaagtagttgcaacctttg 41921987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 96 - 240
Target Start/End: Original strand, 4405109 - 4405253
Alignment:
Q  96 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 195  Q
    ||||||||||||| ||||||||||||||||||| |||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||| |||| |    
T  4405109 tactccctccatttcttttcttttgatgttttaaaacttcaactatattctaaaacatttgatgttttagtgaatttattattgttttctcaattttatc 4405208  T
Q  196 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 240  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||    
T  4405209 cttgttggaaaacaccataaattattaaagtagttgtgacctttg 4405253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 100 - 219
Target Start/End: Complemental strand, 31503210 - 31503091
Alignment:
Q  100 ccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacccttg 199  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||    
T  31503210 ccctccgttccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttcttaagtttacccttg 31503111  T
Q  200 ttggaaaacacaataaacta 219  Q
    ||||||||||| ||||||||    
T  31503110 ttggaaaacactataaacta 31503091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 243435 - 243339
Alignment:
Q  1 cactcgtgtctatatattctttatttttataccttccataatggtaggtgtttcacctatctagcactacactaaatagacatccaattatgaagta 97  Q
    ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  243435 cactcgtgtctatatattctttatttttatatcatccataatggtaggtgtttcacctatctaacactacactaaatagacatccaattatgaagta 243339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 96 - 205
Target Start/End: Complemental strand, 19523974 - 19523863
Alignment:
Q  96 tactccctccattccttttcttt--tgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagttta 193  Q
    ||||||||| ||||||||| |||  |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |||||||||    
T  19523974 tactccctctattccttttttttgttgatgttttagaacttcaactatattccaaaatttttgatgttttagtgaatttattattgttttatcaagttta 19523875  T
Q  194 cccttgttggaa 205  Q
    ||||||||||||    
T  19523874 cccttgttggaa 19523863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 99 - 195
Target Start/End: Original strand, 9332364 - 9332460
Alignment:
Q  99 tccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 195  Q
    ||||||||||  |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |||||||    
T  9332364 tccctccattttttttcttttgatgttttagaacttcaactatatttcaaaacttttgatgttttagtgaatttattattgttttctcaggtttacc 9332460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 111 - 238
Target Start/End: Original strand, 33974506 - 33974636
Alignment:
Q  111 ttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacccttgttggaaaacac 210  Q
    ||||||||||||||||| ||||||||||||||||||||||  ||| ||||||||||| ||||| |||| ||||| ||||||||||||||||| |||||||    
T  33974506 ttttcttttgatgttttcgaacttcaactatattccaaaatattttatgttttagtatatttaatatttttttcccaagtttacccttgttgaaaaacac 33974605  T
Q  211 a--at-aaactattaaagtagttgtgacctt 238  Q
    |  || |||||||||||| ||||||||||||    
T  33974606 accataaaactattaaaggagttgtgacctt 33974636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 96 - 240
Target Start/End: Original strand, 12252069 - 12252216
Alignment:
Q  96 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 195  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||||||||||  ||||||||| || || ||||| | |||||||| |||||||||     
T  12252069 tactccctccattttttttcttttgatgttttagaacttcaactatattccaaaatatttgatgttctaatatatttaatcttgttttcccaagtttact 12252168  T
Q  196 cttgttggaaaacaca--at-aaactattaaagtagttgtgacctttg 240  Q
    || |||| ||||||||  || |||||||||||| |||| |||| ||||    
T  12252169 ctagttgaaaaacacaccataaaactattaaaggagttatgacttttg 12252216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 116 - 240
Target Start/End: Complemental strand, 9215722 - 9215595
Alignment:
Q  116 ttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacccttgttggaaa--acacaat 213  Q
    |||||||||||||||||||||||||||||||||||  ||| ||||||||||| || || |||| |||| |||| ||||||||||||| |||  |||| ||    
T  9215722 ttttgatgttttagaacttcaactatattccaaaatatttaatgttttagtatatgtaatatttttttttcaaatttacccttgttgaaaaagacaccat 9215623  T
Q  214 -aaactattaaagtagttgtgacctttg 240  Q
     ||| |||||||| ||||||||||||||    
T  9215622 aaaattattaaaggagttgtgacctttg 9215595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 96 - 211
Target Start/End: Original strand, 29722955 - 29723070
Alignment:
Q  96 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 195  Q
    ||||| ||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||  |  ||||||| | |||   ||| ||||||    
T  29722955 tactctctccattccttttcttttgatattttagaacttaaactttattccaaaacttttgatgttttataatttttattactttttatccaattttacc 29723054  T
Q  196 cttgttggaaaacaca 211  Q
    ||||||| ||||||||    
T  29723055 cttgttgaaaaacaca 29723070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 96 - 211
Target Start/End: Original strand, 43701551 - 43701666
Alignment:
Q  96 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 195  Q
    ||||||||||||||||||||||||||||||||||||||| ||||  |||||||||  ||||||||||||| |  |||| |||| |||   ||| ||||||    
T  43701551 tactccctccattccttttcttttgatgttttagaacttaaacttcattccaaaaaatttgatgttttagaatttttaatattttttatccaattttacc 43701650  T
Q  196 cttgttggaaaacaca 211  Q
    ||||||| ||||||||    
T  43701651 cttgttgaaaaacaca 43701666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 111 - 240
Target Start/End: Original strand, 46689878 - 46690011
Alignment:
Q  111 ttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacccttgttggaaa---a 207  Q
    ||||||||||||||||||||||||||||||||||||||||   ||||||||||||||   ||| |||| ||||| ||||||||||||| ||| |||   |    
T  46689878 ttttcttttgatgttttagaacttcaactatattccaaaatacttgatgttttagtatggttaatatttttttcccaagtttaccctttttgaaaaaaca 46689977  T
Q  208 cacaat-aaactattaaagtagttgtgacctttg 240  Q
    ||| || |||||||||||| ||||||||| ||||    
T  46689978 cacgataaaactattaaagaagttgtgacatttg 46690011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 96 - 240
Target Start/End: Complemental strand, 31858371 - 31858225
Alignment:
Q  96 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 195  Q
    |||||||||||||  |||||||||||||||||| |||||||||||||||  ||||  ||||||||||||||| ||||| | || ||||| ||| ||||||    
T  31858371 tactccctccattttttttcttttgatgttttacaacttcaactatattttaaaatatttgatgttttagtatatttaat-tttttttcccaaatttacc 31858273  T
Q  196 cttgttggaaaacaca--at-aaactattaaagtagttgtgacctttg 240  Q
    || |||| ||||||||  || ||| |||||||  ||||||||||||||    
T  31858272 ctcgttgaaaaacacatcataaaagtattaaatgagttgtgacctttg 31858225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 95 - 211
Target Start/End: Complemental strand, 33379245 - 33379130
Alignment:
Q  95 gtactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttac 194  Q
    |||||||||||||| ||||||||||||||||||||||||||||||  ||| |||||  ||||||||||||| |  |||| |||| || || ||| |||||    
T  33379245 gtactccctccatttcttttcttttgatgttttagaacttcaacttgatttcaaaatatttgatgttttaggatttttaatatttttatc-caattttac 33379147  T
Q  195 ccttgttggaaaacaca 211  Q
    |||||||| ||||||||    
T  33379146 ccttgttgaaaaacaca 33379130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 111 - 173
Target Start/End: Complemental strand, 49011120 - 49011058
Alignment:
Q  111 ttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaattta 173  Q
    ||||||||||||||||||| |||||||||||||| |||||| ||||||||||||||| |||||    
T  49011120 ttttcttttgatgttttaggacttcaactatatttcaaaacatttgatgttttagtatattta 49011058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 96 - 241
Target Start/End: Original strand, 33915717 - 33915863
Alignment:
Q  96 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 195  Q
    |||||||||||||  |||||||||| |||||| ||| || ||||||||| |||||  ||||||||||||||| ||||| | || ||||| |||||||| |    
T  33915717 tactccctccattt-ttttcttttgttgtttttgaattttaactatatttcaaaatatttgatgttttagtatatttaatttttttttcccaagttta-c 33915814  T
Q  196 cttgttggaaaacaca--at-aaactattaaagtagttgtgacctttgc 241  Q
    ||||||| ||||||||  || |||||||||||   ||||||||||||||    
T  33915815 cttgttgaaaaacacaccataaaactattaaataggttgtgacctttgc 33915863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 154 - 240
Target Start/End: Original strand, 48049057 - 48049146
Alignment:
Q  154 ttgatgttttagtaaatttattattgttttctcaagtttacccttgttggaaaacacaat---aaactattaaagtagttgtgacctttg 240  Q
    |||||||||||||| ||||| |||| ||||| ||||||||||| ||||| |||||||| |   |||||||||||| ||||||||||||||    
T  48049057 ttgatgttttagtatatttaatatttttttcccaagtttacccctgttgaaaaacacactagaaaactattaaaggagttgtgacctttg 48049146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 240
Target Start/End: Original strand, 5514797 - 5514923
Alignment:
Q  116 ttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacccttgttggaaaacacaat-- 213  Q
    |||| |||||||||||||| || ||||||| ||||  ||||||  ||||||| ||||| |||| | || |||||||||||||||||  |||||||| |      
T  5514797 ttttaatgttttagaactttaaatatattctaaaatatttgattatttagtatatttaatatt-tattttcaagtttacccttgttaaaaaacacactat 5514895  T
Q  214 -aaactattaaagtagttgtgacctttg 240  Q
     |||||||||||  ||||||||||||||    
T  5514896 aaaactattaaaagagttgtgacctttg 5514923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 93 - 129
Target Start/End: Complemental strand, 29723417 - 29723381
Alignment:
Q  93 aagtactccctccattccttttcttttgatgttttag 129  Q
    |||||||||||||||||||||||||||||||||||||    
T  29723417 aagtactccctccattccttttcttttgatgttttag 29723381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 93 - 129
Target Start/End: Original strand, 37179328 - 37179364
Alignment:
Q  93 aagtactccctccattccttttcttttgatgttttag 129  Q
    |||||||||||||||||||||||||||||||||||||    
T  37179328 aagtactccctccattccttttcttttgatgttttag 37179364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 129
Target Start/End: Complemental strand, 4405386 - 4405353
Alignment:
Q  96 tactccctccattccttttcttttgatgttttag 129  Q
    ||||||||||||||||||||||||||||||||||    
T  4405386 tactccctccattccttttcttttgatgttttag 4405353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 129
Target Start/End: Complemental strand, 17904440 - 17904407
Alignment:
Q  96 tactccctccattccttttcttttgatgttttag 129  Q
    ||||||||||||||||||||||||||||||||||    
T  17904440 tactccctccattccttttcttttgatgttttag 17904407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 129
Target Start/End: Original strand, 29890826 - 29890859
Alignment:
Q  96 tactccctccattccttttcttttgatgttttag 129  Q
    ||||||||||||||||||||||||||||||||||    
T  29890826 tactccctccattccttttcttttgatgttttag 29890859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 128
Target Start/End: Original strand, 46467335 - 46467367
Alignment:
Q  96 tactccctccattccttttcttttgatgtttta 128  Q
    |||||||||||||||||||||||||||||||||    
T  46467335 tactccctccattccttttcttttgatgtttta 46467367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 129
Target Start/End: Original strand, 6387690 - 6387725
Alignment:
Q  94 agtactccctccattccttttcttttgatgttttag 129  Q
    |||||| |||||||||||||||||||||||||||||    
T  6387690 agtacttcctccattccttttcttttgatgttttag 6387725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 97
Target Start/End: Original strand, 1910969 - 1911031
Alignment:
Q  35 tccataatggtaggtgtttcacctatctagcactacactaaatagacatccaattatgaagta 97  Q
    ||||||||||| |||| ||||||||| |||||||| | |||||||||| || ||| |||||||    
T  1910969 tccataatggtgggtgcttcacctatttagcactatattaaatagacaccctattgtgaagta 1911031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 240
Target Start/End: Complemental strand, 22753257 - 22753201
Alignment:
Q  186 caagtttacccttgttggaaaacaca--ataaactattaaagtagttgtgacctttg 240  Q
    ||||||||| |||||||||||||| |  |||||||||||||  ||||||||||||||    
T  22753257 caagtttacgcttgttggaaaacaaactataaactattaaaaaagttgtgacctttg 22753201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 128
Target Start/End: Complemental strand, 26770456 - 26770424
Alignment:
Q  96 tactccctccattccttttcttttgatgtttta 128  Q
    |||||||||||||| ||||||||||||||||||    
T  26770456 tactccctccattcattttcttttgatgtttta 26770424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 137; Significance: 1e-71; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 96 - 240
Target Start/End: Complemental strand, 33838006 - 33837862
Alignment:
Q  96 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  33838006 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttgttattgttttctcaagtttacc 33837907  T
Q  196 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  33837906 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 33837862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 96 - 240
Target Start/End: Complemental strand, 2509073 - 2508929
Alignment:
Q  96 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  2509073 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttgttattgttttctcaagtttacc 2508974  T
Q  196 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 240  Q
    |||||||||||||||| ||||||||||||||||||||||||||||    
T  2508973 cttgttggaaaacacagtaaactattaaagtagttgtgacctttg 2508929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 96 - 240
Target Start/End: Original strand, 28378947 - 28379091
Alignment:
Q  96 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 195  Q
    |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  28378947 tactccctccattatttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaagtttacc 28379046  T
Q  196 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  28379047 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 28379091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 96 - 240
Target Start/End: Complemental strand, 45334553 - 45334409
Alignment:
Q  96 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 195  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||    
T  45334553 tactccctccattccttttcttttgatgttttagaactttaactatattccaaaacttttgatgttttagtgaatttgttattgttttttcaagtttacc 45334454  T
Q  196 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  45334453 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 45334409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 101 - 226
Target Start/End: Complemental strand, 13469777 - 13469652
Alignment:
Q  101 cctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacccttgt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||    
T  13469777 cctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatattttagtaaatttataattgttttctcaagtttacccttgt 13469678  T
Q  201 tggaaaacacaataaactattaaagt 226  Q
    ||||||||||||||||||||||||||    
T  13469677 tggaaaacacaataaactattaaagt 13469652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 96 - 240
Target Start/End: Original strand, 25106211 - 25106355
Alignment:
Q  96 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 195  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||| |||||||||||    
T  25106211 tactctctccattccttttcttttgatgttttagaacttcaactatattccaaaatttttgatgttttagtgaatttatgattgttttttcaagtttacc 25106310  T
Q  196 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 240  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||    
T  25106311 cttgatggaaaacacaataaactattaaagtagttgtgacttttg 25106355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 94 - 240
Target Start/End: Complemental strand, 38495751 - 38495605
Alignment:
Q  94 agtactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagttta 193  Q
    |||||| ||||||||| ||||||| ||||||||||||||||||||||||||| |||| |||||||||||| || ||||||||||||||||||||||||||    
T  38495751 agtacttcctccattctttttcttgtgatgttttagaacttcaactatattctaaaatttttgatgttttggtgaatttattattgttttctcaagttta 38495652  T
Q  194 cccttgttggaaaacacaataaactattaaagtagttgtgacctttg 240  Q
    ||||||||||||||||||||||||||||||||||||| |||| ||||    
T  38495651 cccttgttggaaaacacaataaactattaaagtagttatgacatttg 38495605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 96 - 240
Target Start/End: Original strand, 9739985 - 9740129
Alignment:
Q  96 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 195  Q
    |||||||||||||||||||||||||||||||||||||||||  |||||| ||||||||||||||||||| | |||||||||||| ||||||||||||| |    
T  9739985 tactccctccattccttttcttttgatgttttagaacttcatgtatatttcaaaacttttgatgttttactgaatttattattgctttctcaagtttatc 9740084  T
Q  196 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 240  Q
    ||||||| |||||||||||||||||||||||||||||||| ||||    
T  9740085 cttgttgaaaaacacaataaactattaaagtagttgtgacatttg 9740129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 96 - 219
Target Start/End: Complemental strand, 27793468 - 27793345
Alignment:
Q  96 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 195  Q
    |||||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||     
T  27793468 tactccttccattcattttcttttgatgttttagatcttcaactatattccaaaacttttaatgttttagtgaatttattattgttttctcaagtttact 27793369  T
Q  196 cttgttggaaaacacaataaacta 219  Q
    ||||||||||||||||||||||||    
T  27793368 cttgttggaaaacacaataaacta 27793345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 140 - 240
Target Start/End: Complemental strand, 2626472 - 2626371
Alignment:
Q  140 atattccaaaacttttgatgttttagtaaatttattatt-gttttctcaagtttacccttgttggaaaacacaataaactattaaagtagttgtgacctt 238  Q
    ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  2626472 atattccaaaacttttgatgttttagtgaatttattatttgttttctcaagtttacccttgttggaaaacacaataaactattaaagtaattgtgacctt 2626373  T
Q  239 tg 240  Q
    ||    
T  2626372 tg 2626371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 96 - 240
Target Start/End: Complemental strand, 32183759 - 32183614
Alignment:
Q  96 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 195  Q
    |||||||| ||||  ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||| ||||| |||| ||||| ||||||||||    
T  32183759 tactcccttcattttttttcttttgatgttttagaacttcaactatattccaaaatatttgatgttttagtatatttaatatttttttcccaagtttacc 32183660  T
Q  196 cttgttggaaaacaca--ataaactattaaagtagttgtgacctttg 240  Q
    ||||||||||||||||  |||||||||| ||| ||||| ||||||||    
T  32183659 cttgttggaaaacacaccataaactatt-aaggagttgcgacctttg 32183614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 96 - 165
Target Start/End: Original strand, 27024433 - 27024502
Alignment:
Q  96 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttag 165  Q
    ||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||    
T  27024433 tactccctccattccttttcttttgatgttttagagcttaaactttattccaaaacttttgatgttttag 27024502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 96 - 163
Target Start/End: Complemental strand, 25979036 - 25978969
Alignment:
Q  96 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgtttt 163  Q
    ||||||||||||| |||||||||||||||||||| ||||||||| |||| |||||| |||||||||||    
T  25979036 tactccctccatttcttttcttttgatgttttaggacttcaactttatttcaaaacatttgatgtttt 25978969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 96 - 211
Target Start/End: Original strand, 8235162 - 8235276
Alignment:
Q  96 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 195  Q
    |||||||||||||  ||||||||||||||||||| ||||||| | |||| |||||| ||||||||||||  |  |||| |||| |||  |||| ||||||    
T  8235162 tactccctccatttattttcttttgatgttttaggacttcaattttatttcaaaacatttgatgttttaagatttttaatatt-tttcttcaattttacc 8235260  T
Q  196 cttgttggaaaacaca 211  Q
    ||||||| ||||||||    
T  8235261 cttgttgaaaaacaca 8235276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 131 - 211
Target Start/End: Complemental strand, 3203492 - 3203413
Alignment:
Q  131 acttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacccttgttggaaaacaca 211  Q
    ||||||||||||||  ||||  ||||||||||||||| ||||| |||| |||||||||||||| | |||||| ||||||||    
T  3203492 acttcaactatattttaaaatatttgatgttttagtatatttaatatt-ttttctcaagtttatctttgttgaaaaacaca 3203413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 93 - 129
Target Start/End: Original strand, 33837726 - 33837762
Alignment:
Q  93 aagtactccctccattccttttcttttgatgttttag 129  Q
    |||||||||||||||||||||||||||||||||||||    
T  33837726 aagtactccctccattccttttcttttgatgttttag 33837762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 158
Target Start/End: Complemental strand, 2626714 - 2626667
Alignment:
Q  111 ttttcttttgatgttttagaacttcaactatattccaaaacttttgat 158  Q
    |||| |||| || |||||||||||||||||||||||||||||||||||    
T  2626714 ttttttttttatattttagaacttcaactatattccaaaacttttgat 2626667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 95 - 128
Target Start/End: Complemental strand, 9740264 - 9740231
Alignment:
Q  95 gtactccctccattccttttcttttgatgtttta 128  Q
    ||||||||||||||||||||||||||||||||||    
T  9740264 gtactccctccattccttttcttttgatgtttta 9740231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 129
Target Start/End: Complemental strand, 25106488 - 25106455
Alignment:
Q  96 tactccctccattccttttcttttgatgttttag 129  Q
    ||||||||||||||||||||||||||||||||||    
T  25106488 tactccctccattccttttcttttgatgttttag 25106455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 129
Target Start/End: Complemental strand, 27027688 - 27027655
Alignment:
Q  96 tactccctccattccttttcttttgatgttttag 129  Q
    ||||||||||||||||||||||||||||||||||    
T  27027688 tactccctccattccttttcttttgatgttttag 27027655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 129
Target Start/End: Complemental strand, 28379224 - 28379191
Alignment:
Q  96 tactccctccattccttttcttttgatgttttag 129  Q
    ||||||||||||||||||||||||||||||||||    
T  28379224 tactccctccattccttttcttttgatgttttag 28379191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 129
Target Start/End: Original strand, 45334276 - 45334309
Alignment:
Q  96 tactccctccattccttttcttttgatgttttag 129  Q
    ||||||||||||||||||||||||||||||||||    
T  45334276 tactccctccattccttttcttttgatgttttag 45334309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 129
Target Start/End: Original strand, 38495470 - 38495505
Alignment:
Q  94 agtactccctccattccttttcttttgatgttttag 129  Q
    |||||||||||||||| |||||||||||||||||||    
T  38495470 agtactccctccattcattttcttttgatgttttag 38495505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 128
Target Start/End: Original strand, 13469508 - 13469540
Alignment:
Q  96 tactccctccattccttttcttttgatgtttta 128  Q
    |||||| ||||||||||||||||||||||||||    
T  13469508 tactccttccattccttttcttttgatgtttta 13469540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 137; Significance: 1e-71; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 96 - 240
Target Start/End: Complemental strand, 27312393 - 27312249
Alignment:
Q  96 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 195  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  27312393 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctcaagtttacc 27312294  T
Q  196 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  27312293 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 27312249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 96 - 240
Target Start/End: Original strand, 32274434 - 32274578
Alignment:
Q  96 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  32274434 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttgttattgttttctcaagtttacc 32274533  T
Q  196 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  32274534 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 32274578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 98 - 240
Target Start/End: Complemental strand, 8504977 - 8504835
Alignment:
Q  98 ctccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttaccct 197  Q
    |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||| |||||||||    
T  8504977 ctccctccattcattttcttttgatgttttagaacttcaactatatttcaaaacttttgatgttttagtgaatttattattattttctcaggtttaccct 8504878  T
Q  198 tgttggaaaacacaataaactattaaagtagttgtgacctttg 240  Q
    ||||| |||||||||||||||||||||||||||||||||||||    
T  8504877 tgttgaaaaacacaataaactattaaagtagttgtgacctttg 8504835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 103 - 240
Target Start/End: Original strand, 5003889 - 5004026
Alignment:
Q  103 tccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacccttgttg 202  Q
    ||||||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  5003889 tccattcatttttttttgatgttttagaacttcaactatatttcaaaacttttgatgttttagtgaatttattattgttttctcaagtttacccttgttg 5003988  T
Q  203 gaaaacacaataaactattaaagtagttgtgacctttg 240  Q
    |||||||||||||||||||||||||||| |||| ||||    
T  5003989 gaaaacacaataaactattaaagtagttttgacatttg 5004026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 96 - 240
Target Start/End: Complemental strand, 29452820 - 29452675
Alignment:
Q  96 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttatta-ttgttttctcaagtttac 194  Q
    ||||||||||||| |||||||| ||||||||||||||||||||||||||| |||  | ||||||||||||| ||||||||| ||||||||||||||||||    
T  29452820 tactccctccatttcttttcttctgatgttttagaacttcaactatattctaaatttcttgatgttttagtgaatttattacttgttttctcaagtttac 29452721  T
Q  195 ccttgttggaaaacacaataaactattaaagtagttgtgacctttg 240  Q
     ||||||||||||||| ||||||||||||| |||||||||||||||    
T  29452720 acttgttggaaaacaccataaactattaaaatagttgtgacctttg 29452675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 96 - 198
Target Start/End: Original strand, 12174700 - 12174802
Alignment:
Q  96 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 195  Q
    |||||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  12174700 tactccctccattccttttcttttaatgttttagaactttaaatatattccaaaacttttgatgttttagtgaatttattattgttttctcaagtttacc 12174799  T
Q  196 ctt 198  Q
    |||    
T  12174800 ctt 12174802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 95 - 240
Target Start/End: Complemental strand, 31171268 - 31171123
Alignment:
Q  95 gtactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttac 194  Q
    |||||||||||||| |||||||||||||| ||||||| ||||| | ||||||||||| || |||||| |||| ||||||||||||||||||||||||||     
T  31171268 gtactccctccatttcttttcttttgatgatttagaaattcaaatgtattccaaaacattagatgttgtagtgaatttattattgttttctcaagtttat 31171169  T
Q  195 ccttgttggaaaacacaataaactattaaagtagttgtgacctttg 240  Q
    | || |||||||||||  |||||||||||| |||||||||||||||    
T  31171168 ctttattggaaaacaccttaaactattaaaatagttgtgacctttg 31171123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 93 - 211
Target Start/End: Original strand, 18741944 - 18742062
Alignment:
Q  93 aagtactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagttt 192  Q
    |||||||||||||||| |||||||||||||||||||| ||||||||| |||| |||||| ||||||||||||||| ||||| |||||| ||||||| |||    
T  18741944 aagtactccctccatttcttttcttttgatgttttaggacttcaactttatttcaaaacatttgatgttttagtatatttaatattgtattctcaaattt 18742043  T
Q  193 acccttgttggaaaacaca 211  Q
    |||||||||| ||||||||    
T  18742044 acccttgttgaaaaacaca 18742062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 157 - 240
Target Start/End: Original strand, 2543142 - 2543225
Alignment:
Q  157 atgttttagtaaatttattattgttttctcaagtttacccttgttggaaaacacaataaactattaaagtagttgtgacctttg 240  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  2543142 atgttttagtgaatttattattgttttctcaagtttacccttgttgaaaaacacaataaactattaaagtagttgtgacatttg 2543225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 96 - 240
Target Start/End: Complemental strand, 7156502 - 7156370
Alignment:
Q  96 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 195  Q
    ||||||||||||| |||||||||||||||||||||   ||||||||||||||||||||| ||||||||||| ||||||||||||||||                
T  7156502 tactccctccatttcttttcttttgatgttttagacaatcaactatattccaaaactttagatgttttagtgaatttattattgtttt------------ 7156415  T
Q  196 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 240  Q
    ||||||||||||||| |||||||||||||||| ||||||| ||||    
T  7156414 cttgttggaaaacaccataaactattaaagtaattgtgacatttg 7156370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 96 - 144
Target Start/End: Complemental strand, 29302548 - 29302500
Alignment:
Q  96 tactccctccattccttttcttttgatgttttagaacttcaactatatt 144  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  29302548 tactccctccattccttttcttttgatgttttagaacttcaactatatt 29302500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 129
Target Start/End: Original strand, 8504733 - 8504766
Alignment:
Q  96 tactccctccattccttttcttttgatgttttag 129  Q
    ||||||||||||||||||||||||||||||||||    
T  8504733 tactccctccattccttttcttttgatgttttag 8504766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 129
Target Start/End: Original strand, 27312114 - 27312147
Alignment:
Q  96 tactccctccattccttttcttttgatgttttag 129  Q
    ||||||||||||||||||||||||||||||||||    
T  27312114 tactccctccattccttttcttttgatgttttag 27312147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 129
Target Start/End: Complemental strand, 2543358 - 2543325
Alignment:
Q  96 tactccctccattccttttcttttgatgttttag 129  Q
    |||||||||||||| |||||||||||||||||||    
T  2543358 tactccctccattcgttttcttttgatgttttag 2543325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 129
Target Start/End: Complemental strand, 32274711 - 32274678
Alignment:
Q  96 tactccctccattccttttcttttgatgttttag 129  Q
    |||||||||||||| |||||||||||||||||||    
T  32274711 tactccctccattcattttcttttgatgttttag 32274678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 128
Target Start/End: Complemental strand, 18742223 - 18742191
Alignment:
Q  96 tactccctccattccttttcttttgatgtttta 128  Q
    ||||||||||||| |||||||||||||||||||    
T  18742223 tactccctccatttcttttcttttgatgtttta 18742191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 137; Significance: 1e-71; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 96 - 240
Target Start/End: Complemental strand, 12399223 - 12399079
Alignment:
Q  96 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  12399223 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttgttattgttttctcaagtttacc 12399124  T
Q  196 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  12399123 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 12399079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 96 - 240
Target Start/End: Original strand, 34208538 - 34208682
Alignment:
Q  96 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  34208538 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttgttattgttttctcaagtttacc 34208637  T
Q  196 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  34208638 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 34208682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 96 - 240
Target Start/End: Original strand, 29874954 - 29875098
Alignment:
Q  96 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 195  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  29874954 tactccctccattctttttcttttgatgttttagaacttcaactatattccaaaacatttgatgttttagtgaatttattattgttttctcaagtttacc 29875053  T
Q  196 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  29875054 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 29875098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 96 - 240
Target Start/End: Original strand, 23090298 - 23090442
Alignment:
Q  96 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 195  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||    
T  23090298 tactccctccattccttttcttttgatgttttagaacttcaactgtattccaaaatttttgatgttttagtgaatttgttattgttttctcaagtttacc 23090397  T
Q  196 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  23090398 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 23090442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 96 - 240
Target Start/End: Original strand, 4145694 - 4145838
Alignment:
Q  96 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 195  Q
    ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||||||    
T  4145694 tactcgctccattccttttcttttgatgttttagaactttaactatattccaaaacttttgatgttttagtgaatttgttattgttttcttaagtttacc 4145793  T
Q  196 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  4145794 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 4145838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 94 - 240
Target Start/End: Complemental strand, 4695441 - 4695295
Alignment:
Q  94 agtactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagttta 193  Q
    |||||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  4695441 agtactcccttcattccttttcttttgattttttagaacttcaactatatttcaaaacttttgatgttttagtgaatttgttattgttttctcaagttta 4695342  T
Q  194 cccttgttggaaaacacaataaactattaaagtagttgtgacctttg 240  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||    
T  4695341 cccttgttggaaaacacaataaactattaaagtagttgtgacatttg 4695295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 96 - 235
Target Start/End: Original strand, 3077597 - 3077736
Alignment:
Q  96 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 195  Q
    |||||||||||||| ||||||||||||||||||||| ||||||||||||  |||||||||||||||||||| ||||| |||||||||||||||||||| |    
T  3077597 tactccctccattcattttcttttgatgttttagaatttcaactatattttaaaacttttgatgttttagtgaatttgttattgttttctcaagtttatc 3077696  T
Q  196 cttgttggaaaacacaataaactattaaagtagttgtgac 235  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  3077697 cttgttggaaaacacaataaactattaaagtagttgtgac 3077736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 111 - 230
Target Start/End: Complemental strand, 42758072 - 42757953
Alignment:
Q  111 ttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacccttgttggaaaacac 210  Q
    |||| |||| ||||||||||||||||||||| || ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||    
T  42758072 ttttttttttatgttttagaacttcaactatttttcaaaacttttgatgttttagtgaatttattattgttttctcaagtttatccttgttggaaaacac 42757973  T
Q  211 aataaactattaaagtagtt 230  Q
     |||||||||||||||||||    
T  42757972 gataaactattaaagtagtt 42757953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 161 - 240
Target Start/End: Complemental strand, 22646121 - 22646042
Alignment:
Q  161 tttagtaaatttattattgttttctcaagtttacccttgttggaaaacacaataaactattaaagtagttgtgacctttg 240  Q
    |||||| |||||||||||||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||| ||||    
T  22646121 tttagtgaatttattattgttttctcaagtttaaccttgttgaaaaacaccataaactattaaagtagttgtgacttttg 22646042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 111 - 211
Target Start/End: Complemental strand, 12096466 - 12096365
Alignment:
Q  111 ttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagta-aatttattattgttttctcaagtttacccttgttggaaaaca 209  Q
    ||||||||||||||||||| ||||||||||||||||||||| |||||||||||| || | |||| |||| ||||||||||| ||| ||||||| ||||||    
T  12096466 ttttcttttgatgttttaggacttcaactatattccaaaacatttgatgttttaatatattttaatattcttttctcaagtgtactcttgttgaaaaaca 12096367  T
Q  210 ca 211  Q
    ||    
T  12096366 ca 12096365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 96 - 211
Target Start/End: Complemental strand, 41610694 - 41610579
Alignment:
Q  96 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 195  Q
    ||||| ||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| || |||| || | |||   ||| ||||||    
T  41610694 tactctctccatttcttttcttttgatgttttagaacttaaactttattccaaaacttttgatgttttagaaattttaatactttttatccaattttacc 41610595  T
Q  196 cttgttggaaaacaca 211  Q
    ||||||  ||||||||    
T  41610594 cttgttaaaaaacaca 41610579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 94 - 165
Target Start/End: Original strand, 42793038 - 42793109
Alignment:
Q  94 agtactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttag 165  Q
    ||||||| ||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||    
T  42793038 agtactcactccattccttttcttttgatgttttagagcttaaactttattccaaaacttttgatgttttag 42793109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 99 - 163
Target Start/End: Original strand, 4434783 - 4434847
Alignment:
Q  99 tccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgtttt 163  Q
    |||||||||| |||||||||||||||||||| ||||||||| |||| ||| |  |||||||||||    
T  4434783 tccctccatttcttttcttttgatgttttaggacttcaactttatttcaagatatttgatgtttt 4434847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 94 - 129
Target Start/End: Original strand, 12398944 - 12398979
Alignment:
Q  94 agtactccctccattccttttcttttgatgttttag 129  Q
    ||||||||||||||||||||||||||||||||||||    
T  12398944 agtactccctccattccttttcttttgatgttttag 12398979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 240
Target Start/End: Original strand, 22528023 - 22528149
Alignment:
Q  117 tttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacccttgttggaaaacaca--at- 213  Q
    |||||| |||||| ||||||| |||| |||||||  ||||||||||||||| ||||| || | || |  ||| |||||| |||||| ||||||||  ||     
T  22528023 tttgatattttaggacttcaattatactccaaaatatttgatgttttagtacatttaataattttattccaaatttacctttgttgaaaaacacaccata 22528122  T
Q  214 aaactattaaagtagttgtgacctttg 240  Q
    |||||||||||  ||||||||||||||    
T  22528123 aaactattaaaagagttgtgacctttg 22528149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 95 - 129
Target Start/End: Original strand, 42757804 - 42757838
Alignment:
Q  95 gtactccctccattccttttcttttgatgttttag 129  Q
    |||||||||||||||||||||||||||||||||||    
T  42757804 gtactccctccattccttttcttttgatgttttag 42757838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 129
Target Start/End: Complemental strand, 29875231 - 29875198
Alignment:
Q  96 tactccctccattccttttcttttgatgttttag 129  Q
    ||||||||||||||||||||||||||||||||||    
T  29875231 tactccctccattccttttcttttgatgttttag 29875198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 129
Target Start/End: Complemental strand, 42793595 - 42793562
Alignment:
Q  96 tactccctccattccttttcttttgatgttttag 129  Q
    ||||||||||||||||||||||||||||||||||    
T  42793595 tactccctccattccttttcttttgatgttttag 42793562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 128
Target Start/End: Complemental strand, 23090575 - 23090543
Alignment:
Q  96 tactccctccattccttttcttttgatgtttta 128  Q
    |||||||||||||||||||||||||||||||||    
T  23090575 tactccctccattccttttcttttgatgtttta 23090543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 128
Target Start/End: Original strand, 41610373 - 41610405
Alignment:
Q  96 tactccctccattccttttcttttgatgtttta 128  Q
    |||||||||||||||||||||||||||||||||    
T  41610373 tactccctccattccttttcttttgatgtttta 41610405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 96 - 207
Target Start/End: Original strand, 19574686 - 19574795
Alignment:
Q  96 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 195  Q
    |||||||||||||  || |||||||||||||||| ||||||| || ||| |||||  ||| |||||||| || ||||| |||| ||||| |||| | |||    
T  19574686 tactccctccattt-ttgtcttttgatgttttaggacttcaattaaatttcaaaatatttaatgttttaatatatttaatatt-ttttcccaaggtcacc 19574783  T
Q  196 cttgttggaaaa 207  Q
    ||||||| ||||    
T  19574784 cttgttgaaaaa 19574795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 145
Target Start/End: Complemental strand, 594362 - 594328
Alignment:
Q  111 ttttcttttgatgttttagaacttcaactatattc 145  Q
    |||||||||||||||||| ||||||||||||||||    
T  594362 ttttcttttgatgttttaaaacttcaactatattc 594328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 165
Target Start/End: Original strand, 8718028 - 8718094
Alignment:
Q  99 tccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttag 165  Q
    |||||||||| ||||||||||||| |||||  | ||||||| |||| |||||  |||||||||||||    
T  8718028 tccctccatttcttttcttttgatattttaagatttcaactttatttcaaaatatttgatgttttag 8718094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 129
Target Start/End: Complemental strand, 34208815 - 34208782
Alignment:
Q  96 tactccctccattccttttcttttgatgttttag 129  Q
    ||||||||||||||||||| ||||||||||||||    
T  34208815 tactccctccattcctttttttttgatgttttag 34208782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 137; Significance: 1e-71; HSPs: 35)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 96 - 240
Target Start/End: Original strand, 18996967 - 18997111
Alignment:
Q  96 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  18996967 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaagtttacc 18997066  T
Q  196 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 240  Q
    |||||||||||||||||||||||||||||||||||||||| ||||    
T  18997067 cttgttggaaaacacaataaactattaaagtagttgtgacttttg 18997111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 96 - 240
Target Start/End: Original strand, 18999506 - 18999650
Alignment:
Q  96 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  18999506 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaagtttacc 18999605  T
Q  196 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 240  Q
    |||||||||||||||||||||||||||||||||||||||| ||||    
T  18999606 cttgttggaaaacacaataaactattaaagtagttgtgacttttg 18999650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 96 - 240
Target Start/End: Complemental strand, 29371815 - 29371671
Alignment:
Q  96 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  29371815 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaagtttacc 29371716  T
Q  196 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 240  Q
    |||||||||||||||||||||||||||||||| ||||||||||||    
T  29371715 cttgttggaaaacacaataaactattaaagtacttgtgacctttg 29371671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 96 - 240
Target Start/End: Complemental strand, 32677754 - 32677610
Alignment:
Q  96 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 195  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  32677754 tactccctccattccttttcttttgatgttttagaacttcaactatataccaaaacttttgatgttttagtgaatttattattgttttctcaagtttacc 32677655  T
Q  196 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  32677654 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 32677610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 96 - 240
Target Start/End: Original strand, 39528749 - 39528893
Alignment:
Q  96 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  39528749 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttgttattgttttctcaagtttacc 39528848  T
Q  196 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  39528849 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 39528893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 96 - 239
Target Start/End: Complemental strand, 1352273 - 1352130
Alignment:
Q  96 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  1352273 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttgttattgttttctcaagtttacc 1352174  T
Q  196 cttgttggaaaacacaataaactattaaagtagttgtgaccttt 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  1352173 cttgttggaaaacacaataaactattaaagtagttgtgaccttt 1352130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 96 - 240
Target Start/End: Complemental strand, 41349648 - 41349504
Alignment:
Q  96 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 195  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  41349648 tactccctccattccttttcttttgatgttttagaacttcaactatattctaaaacttttgatgttttagtgaatttgttattgttttctcaagtttacc 41349549  T
Q  196 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  41349548 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 41349504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 86 - 240
Target Start/End: Original strand, 28228426 - 28228580
Alignment:
Q  86 aattatgaagtactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttct 185  Q
    ||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  28228426 aattaagaactactctctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttct 28228525  T
Q  186 caagtttacccttgttggaaaacacaataaactattaaagtagttgtgacctttg 240  Q
    |||||||||||||||||||||| |||||||||||||||||||| |||||| ||||    
T  28228526 caagtttacccttgttggaaaatacaataaactattaaagtagctgtgacatttg 28228580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 96 - 240
Target Start/End: Complemental strand, 39807256 - 39807112
Alignment:
Q  96 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 195  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  39807256 tacttcctccattccttttcttttgatgttttagaacttcaactatattacaaaacttttgatgttttagtgaatttgttattgttttctcaagtttacc 39807157  T
Q  196 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 240  Q
    || ||||||||||||||||||||||||||||||||||||||||||    
T  39807156 ctcgttggaaaacacaataaactattaaagtagttgtgacctttg 39807112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 96 - 240
Target Start/End: Original strand, 55365908 - 55366052
Alignment:
Q  96 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 195  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||| ||||  ||||||||||||||| ||||||||||||||||||||||||||||    
T  55365908 tactcccttcattccttttcttttgatgttttagaacttcaactatatttcaaattttttgatgttttagtgaatttattattgttttctcaagtttacc 55366007  T
Q  196 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 240  Q
    |||||| ||||||||||||||||||||||||||||||||||||||    
T  55366008 cttgttagaaaacacaataaactattaaagtagttgtgacctttg 55366052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 99 - 240
Target Start/End: Original strand, 21974152 - 21974293
Alignment:
Q  99 tccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttaccctt 198  Q
    |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||    
T  21974152 tccctccatttcttttcttttgatgttttagaatttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaggtttaccttt 21974251  T
Q  199 gttggaaaacacaataaactattaaagtagttgtgacctttg 240  Q
    |||||||||||| ||||| |||||||||||||||||||||||    
T  21974252 gttggaaaacaccataaaatattaaagtagttgtgacctttg 21974293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 99 - 240
Target Start/End: Original strand, 21996583 - 21996724
Alignment:
Q  99 tccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttaccctt 198  Q
    |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||    
T  21996583 tccctccatttcttttcttttgatgttttagaatttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaggtttaccttt 21996682  T
Q  199 gttggaaaacacaataaactattaaagtagttgtgacctttg 240  Q
    |||||||||||| ||||| |||||||||||||||||||||||    
T  21996683 gttggaaaacaccataaaatattaaagtagttgtgacctttg 21996724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 96 - 240
Target Start/End: Complemental strand, 36738111 - 36737967
Alignment:
Q  96 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 195  Q
    |||||| | |||||||||||||||||||||||||||||| |||||||||  |||||||||||||||||||| |||||||||||||||||||||||||||     
T  36738111 tactccattcattccttttcttttgatgttttagaactttaactatattttaaaacttttgatgttttagtgaatttattattgttttctcaagtttact 36738012  T
Q  196 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 240  Q
    |||||||||||||||||||||||||||||||||||||||| ||||    
T  36738011 cttgttggaaaacacaataaactattaaagtagttgtgacatttg 36737967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 102 - 240
Target Start/End: Original strand, 38855323 - 38855461
Alignment:
Q  102 ctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacccttgtt 201  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||||    
T  38855323 ctccattccttttcttttgatgttttaaaacatcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaattttatccttgtt 38855422  T
Q  202 ggaaaacacaataaactattaaagtagttgtgacctttg 240  Q
    | ||||||| |||||||||||||||||||||||||||||    
T  38855423 gaaaaacaccataaactattaaagtagttgtgacctttg 38855461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 99 - 240
Target Start/End: Original strand, 22157261 - 22157402
Alignment:
Q  99 tccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttaccctt 198  Q
    |||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||||||||||||||||||| ||||||| ||    
T  22157261 tccctccatttcttttcttttgatgttttagaacttcaactatattctaaaacttttgatattttagtgaatttattattgttttctcaggtttaccttt 22157360  T
Q  199 gttggaaaacacaataaactattaaagtagttgtgacctttg 240  Q
    |||||||||||| ||||| |||||||||||||||||||||||    
T  22157361 gttggaaaacaccataaaatattaaagtagttgtgacctttg 22157402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 103 - 231
Target Start/End: Complemental strand, 29014960 - 29014832
Alignment:
Q  103 tccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacccttgttg 202  Q
    ||||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  29014960 tccattctttttttttttatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaagtttacccttgttg 29014861  T
Q  203 gaaaacacaataaactattaaagtagttg 231  Q
    ||||||||| |||||||||||||||||||    
T  29014860 gaaaacacattaaactattaaagtagttg 29014832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 111 - 240
Target Start/End: Original strand, 39518422 - 39518551
Alignment:
Q  111 ttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacccttgttggaaaacac 210  Q
    |||| ||||||||||||| ||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||    
T  39518422 tttttttttgatgttttaaaacttcaactatatttcaaaacttttgatattttagtgaatttattattgttttctcaagtttatccttgttggaaaacac 39518521  T
Q  211 aataaactattaaagtagttgtgacctttg 240  Q
    |||||||||||||||||||| |||| ||||    
T  39518522 aataaactattaaagtagttatgacatttg 39518551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 94 - 240
Target Start/End: Original strand, 32839947 - 32840092
Alignment:
Q  94 agtactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagttta 193  Q
    |||||||||||||||| ||||||||| || |||||||||||||||||||||  |||  ||||||||||||||| || |||||||| |||||| ||||||     
T  32839947 agtactccctccattcattttctttttatattttagaacttcaactatattttaaattttttgatgttttagtgaa-ttattattattttcttaagtttg 32840045  T
Q  194 cccttgttggaaaacacaataaactattaaagtagttgtgacctttg 240  Q
     ||||||| |||||||||||||||||||||| |||||||||| ||||    
T  32840046 tccttgttagaaaacacaataaactattaaaatagttgtgacatttg 32840092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 111 - 240
Target Start/End: Complemental strand, 49041107 - 49040977
Alignment:
Q  111 ttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacccttgttggaaaaca- 209  Q
    ||||||||||||||||||||||||||||||| ||||||||  ||||||||||||||| ||||| |||  ||||| || |||||||||||||| ||||||     
T  49041107 ttttcttttgatgttttagaacttcaactatgttccaaaatatttgatgttttagtatatttaatat--ttttcccacgtttacccttgttgaaaaacaa 49041010  T
Q  210 --caataaactattaaagtagttgtgacctttg 240  Q
      ||  |||||||||||| ||||| ||||||||    
T  49041009 accataaaactattaaaggagttgggacctttg 49040977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 93 - 165
Target Start/End: Original strand, 49319344 - 49319416
Alignment:
Q  93 aagtactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttag 165  Q
    ||||||| |||||||||||||||||||||||||||||||||| ||||  |||| |||| ||||||||||||||    
T  49319344 aagtacttcctccattccttttcttttgatgttttagaacttaaacttcattctaaaaattttgatgttttag 49319416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 94 - 129
Target Start/End: Original strand, 1351994 - 1352029
Alignment:
Q  94 agtactccctccattccttttcttttgatgttttag 129  Q
    ||||||||||||||||||||||||||||||||||||    
T  1351994 agtactccctccattccttttcttttgatgttttag 1352029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 95 - 129
Target Start/End: Complemental strand, 39529027 - 39528993
Alignment:
Q  95 gtactccctccattccttttcttttgatgttttag 129  Q
    |||||||||||||||||||||||||||||||||||    
T  39529027 gtactccctccattccttttcttttgatgttttag 39528993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 129
Target Start/End: Complemental strand, 18997244 - 18997211
Alignment:
Q  96 tactccctccattccttttcttttgatgttttag 129  Q
    ||||||||||||||||||||||||||||||||||    
T  18997244 tactccctccattccttttcttttgatgttttag 18997211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 129
Target Start/End: Complemental strand, 18999783 - 18999750
Alignment:
Q  96 tactccctccattccttttcttttgatgttttag 129  Q
    ||||||||||||||||||||||||||||||||||    
T  18999783 tactccctccattccttttcttttgatgttttag 18999750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 129
Target Start/End: Original strand, 29014690 - 29014723
Alignment:
Q  96 tactccctccattccttttcttttgatgttttag 129  Q
    ||||||||||||||||||||||||||||||||||    
T  29014690 tactccctccattccttttcttttgatgttttag 29014723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 129
Target Start/End: Original strand, 36737834 - 36737867
Alignment:
Q  96 tactccctccattccttttcttttgatgttttag 129  Q
    ||||||||||||||||||||||||||||||||||    
T  36737834 tactccctccattccttttcttttgatgttttag 36737867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 129
Target Start/End: Complemental strand, 38855594 - 38855561
Alignment:
Q  96 tactccctccattccttttcttttgatgttttag 129  Q
    ||||||||||||||||||||||||||||||||||    
T  38855594 tactccctccattccttttcttttgatgttttag 38855561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 129
Target Start/End: Complemental strand, 39518684 - 39518651
Alignment:
Q  96 tactccctccattccttttcttttgatgttttag 129  Q
    ||||||||||||||||||||||||||||||||||    
T  39518684 tactccctccattccttttcttttgatgttttag 39518651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 129
Target Start/End: Original strand, 41349371 - 41349404
Alignment:
Q  96 tactccctccattccttttcttttgatgttttag 129  Q
    ||||||||||||||||||||||||||||||||||    
T  41349371 tactccctccattccttttcttttgatgttttag 41349404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 128
Target Start/End: Complemental strand, 46879012 - 46878980
Alignment:
Q  96 tactccctccattccttttcttttgatgtttta 128  Q
    |||||||||||||||||||||||||||||||||    
T  46879012 tactccctccattccttttcttttgatgtttta 46878980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 208
Target Start/End: Original strand, 837370 - 837455
Alignment:
Q  121 atgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacccttgttggaaaac 208  Q
    |||||||||||||||||||| |||| |||| ||||||| |||||||| | ||| |||| |||| |||||||||||  ||||| |||||    
T  837370 atgttttagaacttcaactaaattctaaaa-ttttgatattttagtataattaatatt-ttttttcaagtttacctgtgttgaaaaac 837455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 129
Target Start/End: Original strand, 29371538 - 29371571
Alignment:
Q  96 tactccctccattccttttcttttgatgttttag 129  Q
    |||||||||||||| |||||||||||||||||||    
T  29371538 tactccctccattcattttcttttgatgttttag 29371571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 129
Target Start/End: Original strand, 32677477 - 32677510
Alignment:
Q  96 tactccctccattccttttcttttgatgttttag 129  Q
    |||||||||||||| |||||||||||||||||||    
T  32677477 tactccctccattcattttcttttgatgttttag 32677510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 129
Target Start/End: Original strand, 39806979 - 39807012
Alignment:
Q  96 tactccctccattccttttcttttgatgttttag 129  Q
    |||||||| |||||||||||||||||||||||||    
T  39806979 tactcccttcattccttttcttttgatgttttag 39807012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 202
Target Start/End: Complemental strand, 34667762 - 34667662
Alignment:
Q  102 ctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacccttgtt 201  Q
    ||||||| | |||||||||||||||||| ||||||||| || | |||||  |||||| |||||| |  |||  |||| |||  |||| ||||||||||||    
T  34667762 ctccatttcgtttcttttgatgttttaggacttcaactttaattcaaaatatttgatcttttagaatgtttgatattttttattcaattttacccttgtt 34667663  T
Q  202 g 202  Q
    |    
T  34667662 g 34667662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 134; Significance: 7e-70; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 94 - 239
Target Start/End: Original strand, 46220257 - 46220402
Alignment:
Q  94 agtactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagttta 193  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  46220257 agtactccctctattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttgttattgttttctcaagttta 46220356  T
Q  194 cccttgttggaaaacacaataaactattaaagtagttgtgaccttt 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  46220357 cccttgttggaaaacacaataaactattaaagtagttgtgaccttt 46220402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 96 - 240
Target Start/End: Original strand, 47669119 - 47669263
Alignment:
Q  96 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||    
T  47669119 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaatttttgatgttttagtgaatttgttattgttttctcaagtttacc 47669218  T
Q  196 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  47669219 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 47669263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 96 - 240
Target Start/End: Complemental strand, 10737978 - 10737834
Alignment:
Q  96 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 195  Q
    |||||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  10737978 tactcccttcattccttttcttttaatgttttagaacttcaactatattctaaaacttttgatgttttagtgaatttattattgttttctcaagtttacc 10737879  T
Q  196 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  10737878 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 10737834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 96 - 234
Target Start/End: Original strand, 4817269 - 4817407
Alignment:
Q  96 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||    
T  4817269 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttatcattgttttctcaagtttacc 4817368  T
Q  196 cttgttggaaaacacaataaactattaaagtagttgtga 234  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  4817369 cttgttggaaaacacaataaactattaaggtagttgtga 4817407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 95 - 240
Target Start/End: Original strand, 9831502 - 9831647
Alignment:
Q  95 gtactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttac 194  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||    
T  9831502 gtactccctccattccttttcttttgatgttttagaatttcaactatattccaaaacttttgatgttttagtgaatttgttattattttctcaagtttac 9831601  T
Q  195 ccttgttggaaaacacaataaactattaaagtagttgtgacctttg 240  Q
    |||||||||||||||||||||||||||||| |||||||||||||||    
T  9831602 ccttgttggaaaacacaataaactattaaaatagttgtgacctttg 9831647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 89 - 240
Target Start/End: Original strand, 18126844 - 18126994
Alignment:
Q  89 tatgaagtactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaa 188  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||    
T  18126844 tatgaattactccctccattccttttcttttgatgttttagaacttcaactatattctaaaacttttgatgttttagtgaatttattattgttttctcaa 18126943  T
Q  189 gtttacccttgttggaaaacacaataaactattaaagtagttgtgacctttg 240  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||| ||||    
T  18126944 gtttacccttgttggaaaacacaacaaactatt-aagtagttgtgacttttg 18126994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 95 - 240
Target Start/End: Complemental strand, 3384871 - 3384728
Alignment:
Q  95 gtactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttac 194  Q
    ||||||||| ||||| |||||||||||||||||||||| |||||||| |  ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  3384871 gtactcccttcattctttttcttttgatgttttagaacctcaactattt--caaaacttttgatgttttagtgaatttattattgttttctcaagtttac 3384774  T
Q  195 ccttgttggaaaacacaataaactattaaagtagttgtgacctttg 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  3384773 ccttgttggaaaacacaataaactattaaagtagttgtgacctttg 3384728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 96 - 232
Target Start/End: Original strand, 4055484 - 4055620
Alignment:
Q  96 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||    
T  4055484 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaattaattattgttttctcaagtttacc 4055583  T
Q  196 cttgttggaaaacacaataaactattaaagtagttgt 232  Q
    ||| ||||||||||||||  ||| |||||||||||||    
T  4055584 cttattggaaaacacaattcactgttaaagtagttgt 4055620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 96 - 240
Target Start/End: Original strand, 48564818 - 48564961
Alignment:
Q  96 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 195  Q
    ||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  48564818 tactccctccattacttttcttt-gatgttttaaaacttcaactatattccaaaaattttgatgttttagtgaatttattattgttttctcaagtttacc 48564916  T
Q  196 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 240  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||    
T  48564917 cttgatggaaaacacaataaactattaaagtagttgtgacttttg 48564961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 111 - 235
Target Start/End: Original strand, 8889457 - 8889581
Alignment:
Q  111 ttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacccttgttggaaaacac 210  Q
    |||| |||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||    
T  8889457 ttttttttttatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaagtttacccttgttgaaaaacac 8889556  T
Q  211 aataaactattaaagtagttgtgac 235  Q
    |||||||||||||||||||||||||    
T  8889557 aataaactattaaagtagttgtgac 8889581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 97 - 240
Target Start/End: Original strand, 7414208 - 7414351
Alignment:
Q  97 actccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttaccc 196  Q
    ||||||||||||| |||| |||||||||||||||||||||||||||||  |||  ||||||||||||||| |||||||||||||||||||||||||||||    
T  7414208 actccctccattcatttttttttgatgttttagaacttcaactatattttaaattttttgatgttttagtgaatttattattgttttctcaagtttaccc 7414307  T
Q  197 ttgttggaaaacacaataaactattaaagtagttgtgacctttg 240  Q
    |||||| |||||||||||||||||||||||||||||||| ||||    
T  7414308 ttgttgaaaaacacaataaactattaaagtagttgtgacatttg 7414351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 96 - 198
Target Start/End: Complemental strand, 1236307 - 1236205
Alignment:
Q  96 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 195  Q
    |||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  1236307 tactccctccattcattttcttttgatgttttagaactttaactatattccaaaacttttgatggtttagtgaatttattattgttttctcaagtttacc 1236208  T
Q  196 ctt 198  Q
    |||    
T  1236207 ctt 1236205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 116 - 240
Target Start/End: Original strand, 39241172 - 39241296
Alignment:
Q  116 ttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaag-tttacccttgttggaaaacacaata 214  Q
    |||| ||||||||||| |||||||||||| ||||||||||| ||||| ||| |||||||||||||| | ||||| ||||| ||||||| ||||||| |||    
T  39241172 ttttaatgttttagaa-ttcaactatatttcaaaacttttgttgtttcagtgaatttattattgttgtatcaagttttactcttgttgaaaaacaccata 39241270  T
Q  215 aactattaaagtagttgtgacctttg 240  Q
    ||||||||||||||||||||| ||||    
T  39241271 aactattaaagtagttgtgacttttg 39241296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 93 - 165
Target Start/End: Original strand, 33020203 - 33020275
Alignment:
Q  93 aagtactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttag 165  Q
    |||||||||||||||||||||||||||||||||||||| ||| |||| | |||||||||||||||||||||||    
T  33020203 aagtactccctccattccttttcttttgatgttttagagcttaaacttttttccaaaacttttgatgttttag 33020275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 96 - 175
Target Start/End: Complemental strand, 1749600 - 1749521
Alignment:
Q  96 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttatt 175  Q
    |||| |||| ||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||| ||||||||    
T  1749600 tacttcctctattccttttcttttgatgttttagaactttaattatataccaaaacttttgatgttttagtgaatttatt 1749521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 119 - 211
Target Start/End: Original strand, 26842462 - 26842552
Alignment:
Q  119 tgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacccttgttggaaaacaca 211  Q
    |||||||||||||||||||||||||| |||||  ||||||||||||||| ||||| |||  |||| ||||||||| |||||||| ||||||||    
T  26842462 tgatgttttagaacttcaactatatttcaaaatatttgatgttttagtatatttaatat--ttttttcaagtttatccttgttgaaaaacaca 26842552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 96 - 211
Target Start/End: Complemental strand, 33846935 - 33846820
Alignment:
Q  96 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaattt-attattgttttctcaagtttac 194  Q
    |||||||||||||  ||||||||||||||||||  ||||||| | ||||  ||||  |||||||||| |||| |||| ||| || ||| |||||||||||    
T  33846935 tactccctccattt-ttttcttttgatgttttaagacttcaagtgtattttaaaatatttgatgtttcagtatatttaatttttttttcctcaagtttac 33846837  T
Q  195 ccttgttggaaaacaca 211  Q
    |||||||  ||||||||    
T  33846836 ccttgttaaaaaacaca 33846820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 96 - 211
Target Start/End: Original strand, 33947043 - 33947158
Alignment:
Q  96 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaattt-attattgttttctcaagtttac 194  Q
    |||||||||||||  ||||||||||||||||||  ||||||| | ||||  ||||  |||||||||| |||| |||| ||| || ||| |||||||||||    
T  33947043 tactccctccattt-ttttcttttgatgttttaagacttcaagtgtattttaaaatatttgatgtttcagtatatttaatttttttttcctcaagtttac 33947141  T
Q  195 ccttgttggaaaacaca 211  Q
    |||||||  ||||||||    
T  33947142 ccttgttaaaaaacaca 33947158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 153 - 224
Target Start/End: Original strand, 37875849 - 37875920
Alignment:
Q  153 tttgatgttttagtaaatttattattgttttctcaagtttacccttgttggaaaacacaataaactattaaa 224  Q
    ||||||||||||||| ||||| | ||||||||||||||||| |||||||| |||| |||  | |||||||||    
T  37875849 tttgatgttttagtatatttaatgttgttttctcaagtttatccttgttgaaaaatacaccatactattaaa 37875920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 129
Target Start/End: Original strand, 10737701 - 10737734
Alignment:
Q  96 tactccctccattccttttcttttgatgttttag 129  Q
    ||||||||||||||||||||||||||||||||||    
T  10737701 tactccctccattccttttcttttgatgttttag 10737734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 129
Target Start/End: Complemental strand, 46220536 - 46220503
Alignment:
Q  96 tactccctccattccttttcttttgatgttttag 129  Q
    ||||||||||||||||||||||||||||||||||    
T  46220536 tactccctccattccttttcttttgatgttttag 46220503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 129
Target Start/End: Complemental strand, 47669396 - 47669363
Alignment:
Q  96 tactccctccattccttttcttttgatgttttag 129  Q
    ||||||||||||||||||||||||||||||||||    
T  47669396 tactccctccattccttttcttttgatgttttag 47669363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 129
Target Start/End: Original strand, 1236071 - 1236103
Alignment:
Q  97 actccctccattccttttcttttgatgttttag 129  Q
    |||||||||||||||||||||||||||||||||    
T  1236071 actccctccattccttttcttttgatgttttag 1236103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 96 - 127
Target Start/End: Complemental strand, 48565094 - 48565063
Alignment:
Q  96 tactccctccattccttttcttttgatgtttt 127  Q
    ||||||||||||||||||||||||||||||||    
T  48565094 tactccctccattccttttcttttgatgtttt 48565063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 211
Target Start/End: Complemental strand, 49112535 - 49112439
Alignment:
Q  111 ttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacccttgttggaaaacac 210  Q
    |||||||||||||||    ||||| |||||||||  ||||  ||||||||||||||| |||||  ||||||||   || ||||||||||||| |||||||    
T  49112535 ttttcttttgatgtt----aactttaactatattttaaaatatttgatgttttagtatatttaacattgtttttctaaatttacccttgttgaaaaacac 49112440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 129
Target Start/End: Complemental strand, 9831777 - 9831747
Alignment:
Q  99 tccctccattccttttcttttgatgttttag 129  Q
    |||||||||||||||||||||||||||||||    
T  9831777 tccctccattccttttcttttgatgttttag 9831747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 129
Target Start/End: Complemental strand, 8889720 - 8889687
Alignment:
Q  96 tactccctccattccttttcttttgatgttttag 129  Q
    ||||||||||||||||||| ||||||||||||||    
T  8889720 tactccctccattccttttattttgatgttttag 8889687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 129
Target Start/End: Complemental strand, 33023461 - 33023428
Alignment:
Q  96 tactccctccattccttttcttttgatgttttag 129  Q
    |||||||||||||||||||||||||| |||||||    
T  33023461 tactccctccattccttttcttttgacgttttag 33023428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 129
Target Start/End: Original strand, 37875727 - 37875760
Alignment:
Q  96 tactccctccattccttttcttttgatgttttag 129  Q
    ||||||||||||| ||||||||||||||||||||    
T  37875727 tactccctccatttcttttcttttgatgttttag 37875760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 79
Target Start/End: Original strand, 51776549 - 51776593
Alignment:
Q  35 tccataatggtaggtgtttcacctatctagcactacactaaatag 79  Q
    ||||||||||| |||||||||||||| |||||| ||| |||||||    
T  51776549 tccataatggtgggtgtttcacctatttagcaccacattaaatag 51776593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 131; Significance: 5e-68; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 98 - 240
Target Start/End: Original strand, 15233757 - 15233899
Alignment:
Q  98 ctccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttaccct 197  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  15233757 ctccctctattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttgttattgttttctcaagtttaccct 15233856  T
Q  198 tgttggaaaacacaataaactattaaagtagttgtgacctttg 240  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  15233857 tgttggaaaacacaataaactattaaagtagttgtgacctttg 15233899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 96 - 240
Target Start/End: Complemental strand, 43041126 - 43040982
Alignment:
Q  96 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 195  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  43041126 tactccctccattccttttcttttgatgttttaaaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaattttacc 43041027  T
Q  196 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 240  Q
    ||||||||||||||| |||||||||||||||||||||||||||||    
T  43041026 cttgttggaaaacaccataaactattaaagtagttgtgacctttg 43040982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 96 - 240
Target Start/End: Complemental strand, 35793183 - 35793040
Alignment:
Q  96 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 195  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| |||||||||||    
T  35793183 tactccctccattctttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagagaatttattattgtttt-tcaagtttacc 35793085  T
Q  196 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 240  Q
    |||||||||||||||||||||||||||||||||||||||| ||||    
T  35793084 cttgttggaaaacacaataaactattaaagtagttgtgacatttg 35793040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 96 - 240
Target Start/End: Original strand, 41252415 - 41252559
Alignment:
Q  96 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 195  Q
    |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |    
T  41252415 tactccctccattccttttctttttatgttttagaacttcaaatatattccaaaacttttgatgttttagtgaatttattattgtgttctcaagtttatc 41252514  T
Q  196 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 240  Q
    |||||||||||| ||||||||||||||||||||||||||| ||||    
T  41252515 cttgttggaaaatacaataaactattaaagtagttgtgacatttg 41252559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 96 - 234
Target Start/End: Original strand, 31296083 - 31296221
Alignment:
Q  96 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 195  Q
    |||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  31296083 tactccttccattctttttcttttgatgttttagaacttcaactatattctaaaacttttgatgttttagtgaatttattattgttttctcaaatttacc 31296182  T
Q  196 cttgttggaaaacacaataaactattaaagtagttgtga 234  Q
     |||||| |||||||||||||||||||||||||||||||    
T  31296183 tttgttgaaaaacacaataaactattaaagtagttgtga 31296221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 93 - 239
Target Start/End: Complemental strand, 44104836 - 44104683
Alignment:
Q  93 aagtactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagttt 192  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||    
T  44104836 aagtactccctccgttccttttcttttgatgttttagaacttcaactatatttcaaaacttttgatgttttagtgaatttattattattttctcaagttt 44104737  T
Q  193 accc-------ttgttggaaaacacaataaactattaaagtagttgtgaccttt 239  Q
    ||||       ||||||||||||||||||||||||||| |||||||||||||||    
T  44104736 acccttataaattgttggaaaacacaataaactattaaggtagttgtgaccttt 44104683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 96 - 240
Target Start/End: Original strand, 41642891 - 41643038
Alignment:
Q  96 tactccctccattccttttcttttgatgtttt-agaacttcaactata--ttccaaaacttttgatgttttagtaaatttattattgttttctcaagttt 192  Q
    ||||||||||||| |||||||||||||||||| |||| ||||||||||  |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  41642891 tactccctccatttcttttcttttgatgtttttagaatttcaactatatattccaaaacttttgatgttttagtgaatttattattgttttctcaagttt 41642990  T
Q  193 acccttgttggaaaacacaataaactattaaagtagttgtgacctttg 240  Q
    ||| ||  |||||||||| |||||||||||||||||||||||||||||    
T  41642991 accttttctggaaaacaccataaactattaaagtagttgtgacctttg 41643038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 111 - 240
Target Start/End: Complemental strand, 31903641 - 31903513
Alignment:
Q  111 ttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacccttgttggaaaacac 210  Q
    |||| |||||||||||||||||||||| |||||||||||  |||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||    
T  31903641 tttttttttgatgttttagaacttcaaatatattccaaattttttgatgttttagtaaatttattattgttttatc-agtttacccttattggaaaacac 31903543  T
Q  211 aataaactattaaagtagttgtgacctttg 240  Q
     |||||||||||||||||||||||||||||    
T  31903542 cataaactattaaagtagttgtgacctttg 31903513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 96 - 165
Target Start/End: Complemental strand, 10118729 - 10118660
Alignment:
Q  96 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttag 165  Q
    ||||||||||||||||||||||||||| ||||||| ||| |||| |||||||||||||||||||||||||    
T  10118729 tactccctccattccttttcttttgatattttagagcttaaactttattccaaaacttttgatgttttag 10118660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 111 - 233
Target Start/End: Original strand, 21727684 - 21727809
Alignment:
Q  111 ttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacccttgttg--gaaaac 208  Q
    |||||||||||||||||||||||||||||||||| |||||  ||||||||||| ||| |  || |||| ||| | ||| |||||||||||||   |||||    
T  21727684 ttttcttttgatgttttagaacttcaactatatttcaaaatatttgatgttttggtataactaatattttttccccaaatttacccttgttgaaaaaaac 21727783  T
Q  209 acaat-aaactattaaagtagttgtg 233  Q
    ||||| |||||||||||| |||||||    
T  21727784 acaataaaactattaaaggagttgtg 21727809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 94 - 129
Target Start/End: Original strand, 43040847 - 43040882
Alignment:
Q  94 agtactccctccattccttttcttttgatgttttag 129  Q
    ||||||||||||||||||||||||||||||||||||    
T  43040847 agtactccctccattccttttcttttgatgttttag 43040882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 129
Target Start/End: Original strand, 10112339 - 10112372
Alignment:
Q  96 tactccctccattccttttcttttgatgttttag 129  Q
    ||||||||||||||||||||||||||||||||||    
T  10112339 tactccctccattccttttcttttgatgttttag 10112372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 129
Target Start/End: Complemental strand, 15234032 - 15233999
Alignment:
Q  96 tactccctccattccttttcttttgatgttttag 129  Q
    ||||||||||||||||||||||||||||||||||    
T  15234032 tactccctccattccttttcttttgatgttttag 15233999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 165
Target Start/End: Original strand, 36963131 - 36963200
Alignment:
Q  96 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttag 165  Q
    ||||| ||| |||||||||||||| ||||||||||| || |||| |||| |||||  |||||||||||||    
T  36963131 tactcgctctattccttttcttttaatgttttagaatttaaactttatttcaaaaaatttgatgttttag 36963200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 128
Target Start/End: Original strand, 44104546 - 44104578
Alignment:
Q  96 tactccctccattccttttcttttgatgtttta 128  Q
    |||||||||||||||||||||||||||||||||    
T  44104546 tactccctccattccttttcttttgatgtttta 44104578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 121; Significance: 4e-62; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 96 - 240
Target Start/End: Original strand, 45590742 - 45590886
Alignment:
Q  96 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 195  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||| |||||||||||    
T  45590742 tactccctccattcattttcttttgatgttttagaacttcaactatattctaaaacttttgatgttttagtgaattcattattgttttatcaagtttacc 45590841  T
Q  196 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 240  Q
     ||||||||||||||||||||||||||||||||||||||||||||    
T  45590842 tttgttggaaaacacaataaactattaaagtagttgtgacctttg 45590886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 96 - 240
Target Start/End: Complemental strand, 8956053 - 8955909
Alignment:
Q  96 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 195  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||| |||||||||||    
T  8956053 tactccctccattcctttttttttgatgttttagaacttcaactatattacaaaacttttgatgttttagtgaatttgttattgttttatcaagtttacc 8955954  T
Q  196 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 240  Q
    ||| ||||||||||||||||| |||||||||||||||||||||||    
T  8955953 cttattggaaaacacaataaattattaaagtagttgtgacctttg 8955909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 106 - 240
Target Start/End: Original strand, 34334342 - 34334476
Alignment:
Q  106 attccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacccttgttggaa 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||| ||    
T  34334342 attccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgctttagtgaatttattattgtcttctcaagtttacccttgttgaaa 34334441  T
Q  206 aacacaataaactattaaagtagttgtgacctttg 240  Q
    ||||||||||||||||||||||||||||| |||||    
T  34334442 aacacaataaactattaaagtagttgtgatctttg 34334476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 96 - 240
Target Start/End: Complemental strand, 33288682 - 33288538
Alignment:
Q  96 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 195  Q
    ||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  33288682 tactccctccatttcttttcttttgatattttagaacttcaattatattccaaaacttttgatgttttagtgaatttattattgttttctcaagtttacc 33288583  T
Q  196 cttgttggaaaacacaataaactattaaagtagttgtgacctttg 240  Q
    | ||||||||||||||||| |||  ||||||||||||||| ||||    
T  33288582 catgttggaaaacacaatatactgataaagtagttgtgacatttg 33288538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 102 - 240
Target Start/End: Original strand, 49162108 - 49162245
Alignment:
Q  102 ctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacccttgtt 201  Q
    |||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||| |||||||    
T  49162108 ctccattcattttcttttgatgtttcagaacttcaactatattccaaaatttttgatgttttagtgaatttattattgttttctcaatttta-ccttgtt 49162206  T
Q  202 ggaaaacacaataaactattaaagtagttgtgacctttg 240  Q
    ||||||||| ||||||||||||||||||||| |||||||    
T  49162207 ggaaaacaccataaactattaaagtagttgtaacctttg 49162245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 94 - 240
Target Start/End: Original strand, 18835703 - 18835851
Alignment:
Q  94 agtactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagt--aaatttattattgttttctcaagtt 191  Q
    |||||||||| ||||  |||||||||||||||||||||||||||||||||||||||||||| |||||||||||  | || ||||||||||||||||| ||    
T  18835703 agtactcccttcatttattttcttttgatgttttagaacttcaactatattccaaaactttcgatgttttagtgaatatatattattgttttctcaaatt 18835802  T
Q  192 tacccttgttggaaaacacaataaactattaaagtagttgtgacctttg 240  Q
    || ||||||| |||||||  |||||||||||||||||||||||| ||||    
T  18835803 tatccttgttagaaaacatcataaactattaaagtagttgtgacatttg 18835851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 96 - 188
Target Start/End: Complemental strand, 30469445 - 30469353
Alignment:
Q  96 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaa 188  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  30469445 tactcccttcattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtgaatttattattgttttctcaa 30469353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 99 - 195
Target Start/End: Original strand, 39481906 - 39482002
Alignment:
Q  99 tccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacc 195  Q
    |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  39481906 tccctccatttcttttcttttgatgttttagaacttcaactattttccaaaacttttgatgttttagtaaatttattattgttttctcaggtttacc 39482002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 111 - 240
Target Start/End: Complemental strand, 50774325 - 50774191
Alignment:
Q  111 ttttcttttgatgttttagaacttcaactatattccaaaacttttgatg-----ttttagtaaatttattattgttttctcaagtttacccttgttggaa 205  Q
    |||| ||||||||||||||||||| ||||||||| |||||||||||||      ||||||| ||||||||||||||||||||||||||| ||||||||||    
T  50774325 tttttttttgatgttttagaactttaactatatttcaaaacttttgatacagtattttagtgaatttattattgttttctcaagtttactcttgttggaa 50774226  T
Q  206 aacacaataaactattaaagtagttgtgacctttg 240  Q
    ||||||||||||||||||| |||| ||||| ||||    
T  50774225 aacacaataaactattaaattagtcgtgacttttg 50774191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 162 - 240
Target Start/End: Original strand, 36971115 - 36971192
Alignment:
Q  162 ttagtaaatttattattgttttctcaagtttacccttgttggaaaacacaataaactattaaagtagttgtgacctttg 240  Q
    ||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||||||||    
T  36971115 ttagtgaatttattattgttttctgaagtttacc-ttgttggaaaacacaataaactattaaaatagttgtgacctttg 36971192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 96 - 165
Target Start/End: Original strand, 19256186 - 19256255
Alignment:
Q  96 tactccctccattccttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttag 165  Q
    ||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||    
T  19256186 tactccctccattccttttcttttgatgttttagagcttaaactttattccaaaacttttgatgttttag 19256255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 111 - 211
Target Start/End: Complemental strand, 26025784 - 26025685
Alignment:
Q  111 ttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacccttgttggaaaacac 210  Q
    ||||||||||||||||||| ||||||||||||||||||||  |||||  |||||||| ||||| |||| ||||| ||||||||||||||||| |||||||    
T  26025784 ttttcttttgatgttttaggacttcaactatattccaaaatatttgacattttagtatatttaatatt-ttttcccaagtttacccttgttgaaaaacac 26025686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 96 - 146
Target Start/End: Original strand, 36016279 - 36016329
Alignment:
Q  96 tactccctccattccttttcttttgatgttttagaacttcaactatattcc 146  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36016279 tactccctccattccttttcttttgatgttttagaacttcaactatattcc 36016329  T

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Target: chr4; HSP #14
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 111 - 165
Target Start/End: Original strand, 36968353 - 36968407
Alignment:
Q  111 ttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttag 165  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36968353 tttttttttgatgttttagaacttcaactatattccaaaacttttgatgttttag 36968407  T

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Target: chr4; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 111 - 240
Target Start/End: Complemental strand, 33109163 - 33109031
Alignment:
Q  111 ttttcttttgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttacccttgttggaaaacac 210  Q
    ||||||||| ||||||||| ||||||||||||||  ||||   |||||||||||||| ||||| |||| |||||| ||||||| |||||||  |||||||    
T  33109163 ttttcttttaatgttttaggacttcaactatattttaaaataattgatgttttagtatatttaatatttttttcttaagtttatccttgttaaaaaacac 33109064  T
Q  211 a--at-aaactattaaagtagttgtgacctttg 240  Q
    |  || |||||||||||  ||||||||||||||    
T  33109063 accataaaactattaaatgagttgtgacctttg 33109031  T

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Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 96 - 130
Target Start/End: Complemental strand, 19257137 - 19257103
Alignment:
Q  96 tactccctccattccttttcttttgatgttttaga 130  Q
    |||||||||||||||||||||||||||||||||||    
T  19257137 tactccctccattccttttcttttgatgttttaga 19257103  T

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Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 129
Target Start/End: Original strand, 8955779 - 8955809
Alignment:
Q  99 tccctccattccttttcttttgatgttttag 129  Q
    |||||||||||||||||||||||||||||||    
T  8955779 tccctccattccttttcttttgatgttttag 8955809  T

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Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 129
Target Start/End: Complemental strand, 45591019 - 45590986
Alignment:
Q  96 tactccctccattccttttcttttgatgttttag 129  Q
    |||||||||||||| |||||||||||||||||||    
T  45591019 tactccctccattcattttcttttgatgttttag 45590986  T

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Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 129
Target Start/End: Complemental strand, 49162365 - 49162332
Alignment:
Q  96 tactccctccattccttttcttttgatgttttag 129  Q
    ||||||||||||||| ||||||||||||||||||    
T  49162365 tactccctccattccctttcttttgatgttttag 49162332  T

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Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 129
Target Start/End: Complemental strand, 39482138 - 39482106
Alignment:
Q  97 actccctccattccttttcttttgatgttttag 129  Q
    |||||||||||| ||||||||||||||||||||    
T  39482138 actccctccatttcttttcttttgatgttttag 39482106  T

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Target: scaffold0103 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 96 - 240
Target Start/End: Original strand, 44619 - 44764
Alignment:
Q  96 tactccctccattccttttcttt-tgatgttttagaacttcaactatattccaaaacttttgatgttttagtaaatttattattgttttctcaagtttac 194  Q
    |||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||    
T  44619 tactcccttcattccttttctttctgatgtttgagaacttcaactatattccaaaacttttgaggttttagtgaatttattattgttttctcaagtttac 44718  T
Q  195 ccttgttggaaaacacaataaactattaaagtagttgtgacctttg 240  Q
    |||||||| |||||||||||||||||||||||||||||||||||||    
T  44719 ccttgttgaaaaacacaataaactattaaagtagttgtgacctttg 44764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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