View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9853_high_3 (Length: 599)

Name: NF9853_high_3
Description: NF9853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9853_high_3
NF9853_high_3
[»] chr2 (3 HSPs)
chr2 (239-592)||(14430377-14430743)
chr2 (19-203)||(14430181-14430374)
chr2 (329-366)||(44183981-44184018)
[»] chr8 (1 HSPs)
chr8 (329-393)||(30663628-30663692)
[»] chr1 (2 HSPs)
chr1 (329-393)||(22855101-22855165)
chr1 (329-377)||(14135941-14135989)
[»] chr5 (2 HSPs)
chr5 (328-383)||(35336658-35336713)
chr5 (329-391)||(34126347-34126409)
[»] chr4 (2 HSPs)
chr4 (329-383)||(2297330-2297384)
chr4 (324-364)||(40418432-40418472)


Alignment Details
Target: chr2 (Bit Score: 298; Significance: 1e-167; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 239 - 592
Target Start/End: Original strand, 14430377 - 14430743
Alignment:
Q  239 tttgccaacaaaatatgatatgctactatacaaaaattacaaaaaaccaaatttgatgtcacaa-catgagttatattatatatcaaaagttaaatacaa 337  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  14430377 tttgccaacaaaatatgatatgctactatacaaaaattaaaaaaaaccaaatttgatgtcacaaacatgagttatattatatatcaaaagttaaatacaa 14430476  T
Q  338 attcatgttagcttcaatatgaaacaccagaaagcatcctcgaaatcaaataaaaacagataccaaaagtgaaatgatgctaacaagacatgaattaaaa 437  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| |||||||||||    
T  14430477 attcatgttagcttcaatatgaaacaccagaaagcatcctcgaaatcaaataaaaacagataccaaaagtgaaatgatagtaacaagagatgaattaaaa 14430576  T
Q  438 ------------atcaaaaccaccatcatcaaagccagcatcatatccagcatcataagaagaagcatcagacatcatatctccaatcaacatcccacct 525  Q
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  14430577 atcaaaaccaccatcaaaaccaccatcatcaaagccagcatcatatccagcatcataagaagaagcatcagaaatcatatctccaatcaacatcccacct 14430676  T
Q  526 aaagcacctccaagcaaccctgctcccaatcccattcccattttattcttcttaggcttctgtgctt 592  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14430677 aaagcacctccaagcaaccctgctcccaatcccattcccattttattcttcttaggcttctgtgctt 14430743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 19 - 203
Target Start/End: Original strand, 14430181 - 14430374
Alignment:
Q  19 ataatcacatctgcttgcctatacaataatataaaagttcgcagtgtaaccataatccggaccacaatttgagacgataaaattagcaaccaagatg--- 115  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||       
T  14430181 ataatcacatctgcttgcctatacaataatataaaagttcacagtgtaaccataatccggaccacagtttgagacgataaaattagcaaccaagatgttt 14430280  T
Q  116 ------ttctttagttgatttgattattcagttaatttagttgctctaaaatttctcatcaataagcctaatcctcatggtcacaaactacaca 203  Q
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  14430281 ataagtttctttagttgatttgattattcagttaatttagttgctctaaaatttctcatcaataagcctaatcctcatgctcacaaactacaca 14430374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 366
Target Start/End: Complemental strand, 44184018 - 44183981
Alignment:
Q  329 taaatacaaattcatgttagcttcaatatgaaacacca 366  Q
    |||||||||||||| |||||||||||| ||||||||||    
T  44184018 taaatacaaattcaggttagcttcaatctgaaacacca 44183981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 329 - 393
Target Start/End: Complemental strand, 30663692 - 30663628
Alignment:
Q  329 taaatacaaattcatgttagcttcaatatgaaacaccagaaagcatcctcgaaatcaaataaaaa 393  Q
    |||||||||||||| |||||||||||| | |||||||| ||||||||||| |||| ||| |||||    
T  30663692 taaatacaaattcaagttagcttcaatctaaaacaccaaaaagcatcctcaaaattaaaaaaaaa 30663628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 329 - 393
Target Start/End: Original strand, 22855101 - 22855165
Alignment:
Q  329 taaatacaaattcatgttagcttcaatatgaaacaccagaaagcatcctcgaaatcaaataaaaa 393  Q
    |||||||||||||  |||||||||||| |||||||||| |||| |||||| |||| |||||||||    
T  22855101 taaatacaaattctggttagcttcaatctgaaacaccaaaaagtatcctcaaaataaaataaaaa 22855165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 329 - 377
Target Start/End: Original strand, 14135941 - 14135989
Alignment:
Q  329 taaatacaaattcatgttagcttcaatatgaaacaccagaaagcatcct 377  Q
    |||||||||||||| |||||||| ||| |||||||||| ||||||||||    
T  14135941 taaatacaaattcaggttagcttaaatttgaaacaccaaaaagcatcct 14135989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 328 - 383
Target Start/End: Complemental strand, 35336713 - 35336658
Alignment:
Q  328 ttaaatacaaattcatgttagcttcaatatgaaacaccagaaagcatcctcgaaat 383  Q
    |||||||||||||||  ||||||||||| |||||||||| ||||||||||| ||||    
T  35336713 ttaaatacaaattcaaattagcttcaatttgaaacaccaaaaagcatcctcaaaat 35336658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 329 - 391
Target Start/End: Original strand, 34126347 - 34126409
Alignment:
Q  329 taaatacaaattcatgttagcttcaatatgaaacaccagaaagcatcctcgaaatcaaataaa 391  Q
    ||||||||||||||||||| ||||||| | |||||||| | ||||| ||| |||| |||||||    
T  34126347 taaatacaaattcatgttaccttcaatttaaaacaccaaatagcattctcaaaataaaataaa 34126409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 329 - 383
Target Start/End: Complemental strand, 2297384 - 2297330
Alignment:
Q  329 taaatacaaattcatgttagcttcaatatgaaacaccagaaagcatcctcgaaat 383  Q
    ||||||||||||||  ||||||| ||| |||||||||| ||||||||||| ||||    
T  2297384 taaatacaaattcaaattagctttaatctgaaacaccaaaaagcatcctcaaaat 2297330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 324 - 364
Target Start/End: Original strand, 40418432 - 40418472
Alignment:
Q  324 aaagttaaatacaaattcatgttagcttcaatatgaaacac 364  Q
    ||||||||||||||||||| | |||||||||| ||||||||    
T  40418432 aaagttaaatacaaattcaagctagcttcaatctgaaacac 40418472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University