View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9853_high_6 (Length: 367)
Name: NF9853_high_6
Description: NF9853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9853_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 20 - 358
Target Start/End: Complemental strand, 16000952 - 16000614
Alignment:
| Q |
20 |
aggtgtggccaacacatctctagccattgttgccaaaacagggtaacgaacacaatttttcttccaccaagtaagaatgtcaaagcttggatcatcgttt |
119 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16000952 |
aggtgtggccaacacatctctaaccattgttgccaaaacagggtaacgaacacagtttttcttccaccaagtaagaatgtcaaagcttggatcatcgttt |
16000853 |
T |
|
| Q |
120 |
tctggagtgtcactcaagtatctctcaaggtcattttgttgaacaatggtttctttggttttcaagtgttttttgtaggcatctgaccttgcatttaggg |
219 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16000852 |
tctggagggtcactcaagtatctctcaaggtcattttgttgaacaatggtttctttggttttcaagtgttttttgtaggcatctgaccttgcatttaggg |
16000753 |
T |
|
| Q |
220 |
atggatttttgggaacagcaggttgttcaacagaggaattgttgctgcccgaagggccaacaaaggattcatgttcagatttgtaaagattgtacaactt |
319 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16000752 |
atggatttttgggaacatcaggttgttcaacagaggaattgttgctgcccgaagggccaacaaaggattcatgttcagatttgtaaagattgtacaactt |
16000653 |
T |
|
| Q |
320 |
gaacaaattatcactcacactcccagccctttcctttgc |
358 |
Q |
| |
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||||||||||||||||||||||||| ||||||| ||||| |
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| T |
16000652 |
gaacaaattatcactcacactcccaaccctttcttttgc |
16000614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 21 - 359
Target Start/End: Original strand, 6837858 - 6838196
Alignment:
| Q |
21 |
ggtgtggccaacacatctctagccattgttgccaaaacagggtaacgaacacaatttttcttccaccaagtaagaatgtcaaagcttggatcatcgtttt |
120 |
Q |
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| T |
6837858 |
ggtgtggccaacacatctctaaccattgttgccaaaacagggtaacgaacacagtttttcttccaccaagtaagaatgtcaaagcttggatcatcgtttt |
6837957 |
T |
|
| Q |
121 |
ctggagtgtcactcaagtatctctcaaggtcattttgttgaacaatggtttctttggttttcaagtgttttttgtaggcatctgaccttgcatttaggga |
220 |
Q |
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|||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |
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| T |
6837958 |
ctggagggtcactcaagtatctctcaaggtcattttgtggaacaatggtttctttggttttcaagtgttttttgtaggcatctgcccttgtatttaggga |
6838057 |
T |
|
| Q |
221 |
tggatttttgggaacagcaggttgttcaacagaggaattgttgctgcccgaagggccaacaaaggattcatgttcagatttgtaaagattgtacaacttg |
320 |
Q |
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|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6838058 |
tggaatttttggaacagcaggttgttcaacagaggaattgttgctgcccgaagggccaacaaaggattcatgttcagatttgtaaagattgtacaacttg |
6838157 |
T |
|
| Q |
321 |
aacaaattatcactcacactcccagccctttcctttgct |
359 |
Q |
| |
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|| ||||||||||||||||||||||||||||| |||||| |
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| T |
6838158 |
aataaattatcactcacactcccagccctttcttttgct |
6838196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 21 - 359
Target Start/End: Complemental strand, 22598586 - 22598248
Alignment:
| Q |
21 |
ggtgtggccaacacatctctagccattgttgccaaaacagggtaacgaacacaatttttcttccaccaagtaagaatgtcaaagcttggatcatcgtttt |
120 |
Q |
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|
||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22598586 |
ggtgtggccaacacatctctaaccattgttgccaaaacagggtaacgaacacagtttttcttccaccaagtaagaatgtcaaagcttggatcatcgtttt |
22598487 |
T |
|
| Q |
121 |
ctggagtgtcactcaagtatctctcaaggtcattttgttgaacaatggtttctttggttttcaagtgttttttgtaggcatctgaccttgcatttaggga |
220 |
Q |
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|||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |
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| T |
22598486 |
ctggagggtcactcaagtatctctcaaggtcattttgtggaacaatggtttctttggttttcaagtgttttttgtaggcatctgcccttgtatttaggga |
22598387 |
T |
|
| Q |
221 |
tggatttttgggaacagcaggttgttcaacagaggaattgttgctgcccgaagggccaacaaaggattcatgttcagatttgtaaagattgtacaacttg |
320 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22598386 |
tggaatttttggaacagcaggttgttcaacagaggaattgttgctgcccgaagggccaacaaaggattcatgttcagatttgtaaagattgtacaacttg |
22598287 |
T |
|
| Q |
321 |
aacaaattatcactcacactcccagccctttcctttgct |
359 |
Q |
| |
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|| ||||||||||||||||||||||||||||| |||||| |
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| T |
22598286 |
aataaattatcactcacactcccagccctttcttttgct |
22598248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 21 - 358
Target Start/End: Complemental strand, 22348026 - 22347700
Alignment:
| Q |
21 |
ggtgtggccaacacatctctagccattgttgccaaaacagggtaacgaacacaatttttcttccaccaagtaagaatgtcaaagcttggatcatcgtttt |
120 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
22348026 |
ggtgtggccaacacatctctaaccattgttgccaaaacagggtaacgaacatagtttttcttccaccaagtaagaatgtcaaagcgtggatcatcgtttt |
22347927 |
T |
|
| Q |
121 |
ctggagtgtcactcaagtatctctcaaggtcattttgttgaacaatggtttctttggttttcaagtgttttttgtaggcatctgaccttgcatttaggga |
220 |
Q |
| |
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|||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |
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| T |
22347926 |
ctggagggtcactcaag-----------gtcattttgtggaacaatggtttctttggttttcaagtgttttttgtaggcatctgcccttgtatttaggga |
22347838 |
T |
|
| Q |
221 |
tggatttttgggaacagcaggttgttcaacagaggaattgttgctgcccgaagggccaacaaaggattcatgttcagatttgtaaagattgtacaacttg |
320 |
Q |
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|
||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
22347837 |
tggattttttggaacagcaggttgttcaacaaaggaattgttgctgcccgaagggccaacaaaggattcatggtcagatttgtaaagattgtacaacttg |
22347738 |
T |
|
| Q |
321 |
aacaaattatcactcacactcccagccctttcctttgc |
358 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||| |
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| T |
22347737 |
aacaaattatcactcacactcccagccctttcttttgc |
22347700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 172
Target Start/End: Original strand, 21281914 - 21282051
Alignment:
| Q |
35 |
atctctagccattgttgccaaaacagggtaacgaacacaatttttcttccaccaagtaagaatgtcaaagcttggatcatcgttttctggagtgtcactc |
134 |
Q |
| |
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||||||| ||||| |||||||||| | |||| ||| ||||||||||||||| |||||||||||| || ||||| ||||| || | ||||| |
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| T |
21281914 |
atctctaaccattattgccaaaactgaataacaaacttcatttttcttccaccacacaagaatgtcaaatttttcatcattgttttaaggtggatcactt |
21282013 |
T |
|
| Q |
135 |
aagtatctctcaaggtcattttgttgaacaatggtttc |
172 |
Q |
| |
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||||| || |||||||||||||||| |||||| ||||| |
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| T |
21282014 |
aagtacctttcaaggtcattttgttaaacaattgtttc |
21282051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 21 - 119
Target Start/End: Original strand, 306665 - 306763
Alignment:
| Q |
21 |
ggtgtggccaacacatctctagccattgttgccaaaacagggtaacgaacacaatttttcttccaccaagtaagaatgtcaaagcttggatcatcgttt |
119 |
Q |
| |
|
||||||||||| ||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||| |
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| T |
306665 |
ggtgtggccaagacatctctaaccattgttgccaaaacaggataacgaacacagtttttcttccaccaagtaagaatgtcaaagcttggaccattgttt |
306763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 113 - 250
Target Start/End: Original strand, 14595448 - 14595585
Alignment:
| Q |
113 |
atcgttttctggagtgtcactcaagtatctctcaaggtcattttgttgaacaatggtttctttggttttcaagtgttttttgtaggcatctgaccttgca |
212 |
Q |
| |
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||||||||| || | |||||| ||||| |||||||||||||||||||||||||||||||| || |||||||| |||| ||| | ||||||| ||||||| |
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| T |
14595448 |
atcgttttcaggtgggtcacttaagtacctctcaaggtcattttgttgaacaatggtttcctttgttttcaaatgttgtttaaatgcatctgcccttgca |
14595547 |
T |
|
| Q |
213 |
tttagggatggatttttgggaacagcaggttgttcaac |
250 |
Q |
| |
|
|| |||||||||||||||| ||| |||||||||| |
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|
| T |
14595548 |
ccaagtgatggatttttgggaagggcaagttgttcaac |
14595585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 110 - 172
Target Start/End: Complemental strand, 13308294 - 13308232
Alignment:
| Q |
110 |
atcatcgttttctggagtgtcactcaagtatctctcaaggtcattttgttgaacaatggtttc |
172 |
Q |
| |
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|||||||||||| || | ||| || ||||| ||||||||||||||||||||||||||||||| |
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|
| T |
13308294 |
atcatcgttttcaggtgggtcgcttaagtacttctcaaggtcattttgttgaacaatggtttc |
13308232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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