View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9853_high_9 (Length: 307)
Name: NF9853_high_9
Description: NF9853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9853_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 273; Significance: 1e-152; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 35979419 - 35979711
Alignment:
| Q |
1 |
ttatgtttttcctgcatgaaaaaactt-aaatttgaatttcgatctgtgttctacttattcagaatgaaacttgtgcatccaagagtttacttcaagaat |
99 |
Q |
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|||||||||||||||||||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35979419 |
ttatgtttttcctgcatgaaaaaaatttaaaattgaatttcgatctgtgttctacttattcagaatgaaacttgtgcatccaagagtttacttcaagaat |
35979518 |
T |
|
| Q |
100 |
taacacaaagaagatattgttccataccaacttataaatctacacggactggtcctcctcatatgccaacttttttctcaactgttgaagtagaaggcgt |
199 |
Q |
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| T |
35979519 |
taacacaaagaagatattgttccataccaacttataaatctacacggactggtcctcctcatatgccaacttttttctcaactgttgaagtagaaggcgt |
35979618 |
T |
|
| Q |
200 |
ggaatttcatggaaaggcatctagttccaaaaaagaggcagaatatgatgctgcaaagattgcttacaaagccttaaaagatggtaagtttat |
292 |
Q |
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| T |
35979619 |
ggaatttcatggaaaggcatctagttccaaaaaagaggcagaatatgatgctgcaaagattgcttacaaggccttaaaagatggtaagtttat |
35979711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 32 - 292
Target Start/End: Original strand, 35969337 - 35969597
Alignment:
| Q |
32 |
ttgaatttcgatctgtgttctacttattcagaatgaaacttgtgcatccaagagtttacttcaagaattaacacaaagaagatattgttccataccaact |
131 |
Q |
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| T |
35969337 |
ttgaatttttatttgtattctacttattcaggaagaatctcgttcatacaagagtttacttcaggaactaacacagaaaaaaggtttttccaaaccaaca |
35969436 |
T |
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| Q |
132 |
tataaatctacacggactggtcctcctcatatgccaacttttttctcaactgttgaagtagaaggcgtggaatttcatggaaaggcatctagttccaaaa |
231 |
Q |
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| T |
35969437 |
tataaaactacacagactggttcccttcatatgccaacttttttctcagctgttgaagtagagggtgtggagtttcatggaaatgcatctagatccaaaa |
35969536 |
T |
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| Q |
232 |
aagaggcagaatatgatgctgcaaagattgcttacaaagccttaaaagatggtaagtttat |
292 |
Q |
| |
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| T |
35969537 |
aagaggcagaacgtgatgctgcaaagattgcttacaaggccataaaagatggtaaatttat |
35969597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 51 - 289
Target Start/End: Original strand, 35956414 - 35956652
Alignment:
| Q |
51 |
ctacttattcagaatgaaacttgtgcatccaagagtttacttcaagaattaacacaaagaagatattgttccataccaacttataaatctacacggactg |
150 |
Q |
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|||||||||||| ||||| ||||| |||||||||| ||||||| || ||| || | ||| | || ||||| |||||| |||||| |||||| | || |
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| T |
35956414 |
ctacttattcaggatgaaccttgtccatccaagagcctacttcaggagttatcagagagagaaggtttttccaaaccaacatataaaactacacaaattg |
35956513 |
T |
|
| Q |
151 |
gtcctcctcatatgccaacttttttctcaactgttgaagtagaaggcgtggaatttcatggaaaggcatctagttccaaaaaagaggcagaatatgatgc |
250 |
Q |
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| T |
35956514 |
gtcctcctcatatgccaacttttttctcaactgtggaagtagagggcatcggatttcatggaaaggcatctaaatccaaaaacaaggcagaagaagatgc |
35956613 |
T |
|
| Q |
251 |
tgcaaagattgcttacaaagccttaaaagatggtaagtt |
289 |
Q |
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| T |
35956614 |
cgcaaagattgcttacatcaccttaaaagagtgtaagtt |
35956652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 55 - 289
Target Start/End: Original strand, 35972324 - 35972558
Alignment:
| Q |
55 |
ttattcagaatgaaacttgtgcatccaagagtttacttcaagaattaacacaaagaagatattgttccataccaacttataaatctacacggactggtcc |
154 |
Q |
| |
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|||||||| ||||| ||||| |||||||||||||||| | |||||||||||| ||| | || ||||| ||| || |||| ||||| | ||||| | |
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| T |
35972324 |
ttattcaggatgaatcttgtccatccaagagtttactactagaattaacacagagagaaggttattccaaaccgacatatatgactacagagtctggttc |
35972423 |
T |
|
| Q |
155 |
tcctcatatgccaacttttttctcaactgttgaagtagaaggcgtggaatttcatggaaaggcatctagttccaaaaaagaggcagaatatgatgctgca |
254 |
Q |
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||||||||||||||||| || ||||||||| |||||||| ||| || |||||||||| ||||||||||| ||||||||| ||||||| |||||||||| |
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| T |
35972424 |
tcctcatatgccaacttattactcaactgtggaagtagagggcttgaaatttcatggcaaggcatctagatccaaaaaacaggcagatattgatgctgca |
35972523 |
T |
|
| Q |
255 |
aagattgcttacaaagccttaaaagatggtaagtt |
289 |
Q |
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||||||||||||| ||||||||||| ||||||| |
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| T |
35972524 |
aagattgcttacattgccttaaaagagtgtaagtt |
35972558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 55 - 289
Target Start/End: Original strand, 35952371 - 35952605
Alignment:
| Q |
55 |
ttattcagaatgaaacttgtgcatccaagagtttacttcaagaattaacacaaagaagatattgttccataccaacttataaatctacacggactggtcc |
154 |
Q |
| |
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|||||||| ||||| ||||| | |||||||||||||| | |||||||||||| ||| | || ||||| |||||| |||| | ||| | | ||||| | |
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| T |
35952371 |
ttattcaggatgaatcttgtccttccaagagtttactactagaattaacacagagagaaggttattccaaaccaacatatacaactatagagtctggttc |
35952470 |
T |
|
| Q |
155 |
tcctcatatgccaacttttttctcaactgttgaagtagaaggcgtggaatttcatggaaaggcatctagttccaaaaaagaggcagaatatgatgctgca |
254 |
Q |
| |
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|| |||||||| ||||| |||||||||||| |||||||| || || |||||||||||||||||||||| ||||||||| | ||||| |||||||||| |
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| T |
35952471 |
tcttcatatgcgaacttatttctcaactgtggaagtagagggattgaaatttcatggaaaggcatctagatccaaaaaacaagcagatattgatgctgca |
35952570 |
T |
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| Q |
255 |
aagattgcttacaaagccttaaaagatggtaagtt |
289 |
Q |
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||||||||||||| ||||||||||| ||||||| |
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| T |
35952571 |
aagattgcttacattgccttaaaagagtgtaagtt |
35952605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 217 - 289
Target Start/End: Original strand, 35974469 - 35974541
Alignment:
| Q |
217 |
catctagttccaaaaaagaggcagaatatgatgctgcaaagattgcttacaaagccttaaaagatggtaagtt |
289 |
Q |
| |
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||||||| |||| ||||||||||||| ||||||||| |||||||||||||| |||||||||| ||||||| |
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| T |
35974469 |
catctagatccataaaagaggcagaacatgatgctgaaaagattgcttacattaccttaaaagagtgtaagtt |
35974541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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