View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9853_low_10 (Length: 491)
Name: NF9853_low_10
Description: NF9853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9853_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 1 - 445
Target Start/End: Complemental strand, 33644841 - 33644397
Alignment:
| Q |
1 |
atattgccaccatggtgaatgctaaaagagtccccacactgacctgcagtagaaaatcaaaatacatgtcggtactatactaatataaactgtagataca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
33644841 |
atattgccaccatggtgaatgctaaaagagtccccacactgacctgcagtagaaaatcaaaatacatgtcggtactatactaatataaactgtatataca |
33644742 |
T |
|
| Q |
101 |
ttttccttgagtggttatgattcatttatatcatgagagcaggctctttcatggtatgttccgttatctattatatacagtggacttaccatccctgcaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
33644741 |
ttttccttgagtggttatgattcatttatatcatgagagcaggctctttcatggtatgttccgatatctattatatacagtggacttaccatccctgcaa |
33644642 |
T |
|
| Q |
201 |
gatcagagacttccatagaaaatgctaagactgcagcagctaggccggtaattattgtgcccttgacaggaactagagtgtgcttatttatgtcacnnnn |
300 |
Q |
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| T |
33644641 |
gatcagagacttccatagaaaatgctaagactgcagcagctaggccggtaattattgtgcccttgacaggaactagagtgtgcttatttatgtcacaaaa |
33644542 |
T |
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| Q |
301 |
nnntggtggcagtagtccatcccttgccatagccatcaaaattcgtggctgtgaaacattgaacaaaaatactatttagtttttggctcgtcaaatcaaa |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33644541 |
aaatggtggcagtagtccatcccttgccatagccatcaaaattcgtggctgtgaaacattgaacaaaaatactatttagtttttggctcgtcaaatcaaa |
33644442 |
T |
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| Q |
401 |
tacttataaagaaaaactgagaagttttgtgataaatggaaaagg |
445 |
Q |
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| T |
33644441 |
tacttataaagaaaaactgagaagttttgtgataaatggaaaagg |
33644397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 304 - 368
Target Start/End: Original strand, 9614773 - 9614837
Alignment:
| Q |
304 |
tggtggcagtagtccatcccttgccatagccatcaaaattcgtggctgtgaaacattgaacaaaa |
368 |
Q |
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| T |
9614773 |
tggtggcaatagtccatcccttgccatagccatcaaaattcttggctgagaagcattaaacaaaa |
9614837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 183 - 368
Target Start/End: Original strand, 9639445 - 9639630
Alignment:
| Q |
183 |
gacttaccatccctgcaagatcagagacttccatagaaaatgctaagactgcagcagctaggccggtaattattgtgcccttgacaggaactagagtgtg |
282 |
Q |
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| T |
9639445 |
gacttaccatgccagcaagttgagagacatccatgaaaaaggccaaggatgcagcaacaaggccagtaactatggtactctttacaggaacttggctctg |
9639544 |
T |
|
| Q |
283 |
cttatttatgtcacnnnnnnntggtggcagtagtccatcccttgccatagccatcaaaattcgtggctgtgaaacattgaacaaaa |
368 |
Q |
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| T |
9639545 |
cttatttatgtcagaaaaaaatggtggtagaagtccatcccttgccatagccatcaaaattcttggctgtgagtcattcaacaaaa |
9639630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 183 - 351
Target Start/End: Original strand, 9648567 - 9648735
Alignment:
| Q |
183 |
gacttaccatccctgcaagatcagagacttccatagaaaatgctaagactgcagcagctaggccggtaattattgtgcccttgacaggaactagagtgtg |
282 |
Q |
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|||||||||| || ||||| | |||||| ||||| ||||||| ||| | |||||| | |||||||||| ||| || | ||| |||||||| | |||| |
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| T |
9648567 |
gacttaccatgccagcaagttgagagacatccatgaaaaatgccaaggcggcagcaacaaggccggtaactatggtactctttacaggaacatggctgtg |
9648666 |
T |
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| Q |
283 |
cttatttatgtcacnnnnnnntggtggcagtagtccatcccttgccatagccatcaaaattcgtggctg |
351 |
Q |
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| T |
9648667 |
cttatttatatcagaaaaaaatggtggcagcaatccgtcccttgccatagccatcaaaattcttggctg |
9648735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 183 - 351
Target Start/End: Original strand, 9654584 - 9654752
Alignment:
| Q |
183 |
gacttaccatccctgcaagatcagagacttccatagaaaatgctaagactgcagcagctaggccggtaattattgtgcccttgacaggaactagagtgtg |
282 |
Q |
| |
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|||||||||| || ||||| | |||||| ||||| ||||||| ||| | |||||| | |||||||||| ||| || | ||| |||||||| | |||| |
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| T |
9654584 |
gacttaccatgccagcaagttgagagacatccatgaaaaatgccaaggcggcagcaacaaggccggtaactatggtactctttacaggaacatggctgtg |
9654683 |
T |
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| Q |
283 |
cttatttatgtcacnnnnnnntggtggcagtagtccatcccttgccatagccatcaaaattcgtggctg |
351 |
Q |
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||||||||| ||| ||||||||| | ||| ||||||||||||||||||||||||| |||||| |
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| T |
9654684 |
cttatttatatcagaaaaaaatggtggcagcaatccgtcccttgccatagccatcaaaattcttggctg |
9654752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 304 - 351
Target Start/End: Original strand, 9628604 - 9628651
Alignment:
| Q |
304 |
tggtggcagtagtccatcccttgccatagccatcaaaattcgtggctg |
351 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||| || |||||| |
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| T |
9628604 |
tggtggcagtagtccatcccttgccattgccatcaaaagtcttggctg |
9628651 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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