View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9853_low_11 (Length: 481)
Name: NF9853_low_11
Description: NF9853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9853_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 20 - 468
Target Start/End: Original strand, 41290252 - 41290700
Alignment:
| Q |
20 |
acttactaggaaattaaacgcatatgtcctgtcttgcgttgttatgttaagtagatcaaacacacatttactgtcaaactagtcaatgaattataagtgt |
119 |
Q |
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| T |
41290252 |
acttactaggaaattcaacgcatatgtcctgtcttgcgttgttatgttaagtagatcaaacacacatttactgtcaaactagtcaatgaattataagtgt |
41290351 |
T |
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| Q |
120 |
tgata-tacaagttatttctataacaagagatgaaatttaaccttcttcgtgtaagctatccttggtaggttatggaaataagctgaaatcagtttagtt |
218 |
Q |
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| T |
41290352 |
tgataatacaagttatttctataacaagagatgaaatttaaccttcttcgtgtaagctatccttggtaggttatggaaataagctgaaatcagtttagtt |
41290451 |
T |
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| Q |
219 |
ctcccagacagtttcgcaagtgcttattatgttgctagataagttcaaacaagtcaatctaaacaatccgtattcctcaactgtnnnnnnnngcctttag |
318 |
Q |
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| T |
41290452 |
ctcccagacagtttctcaagtgcttattatgttgctagataagttcaaacaagtcaatctaaacaatccgtattcctc-actgtaaaaaaaagcctttag |
41290550 |
T |
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| Q |
319 |
gaatggcgtcggagaaggcttgagcaatgttataccttttctaaatttcacgnnnnnnntaatactacacttatatatagaatagctaggacatcctatt |
418 |
Q |
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| T |
41290551 |
gaatggcgtcggagaaggcttgagcaatgttataccttttctaaatttcacgaaaaaaataatactacacttatatatagaatagctaggacatcctatt |
41290650 |
T |
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| Q |
419 |
actgattatactgcaatgtcttctagctgtctgttatccctaacatgtct |
468 |
Q |
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| T |
41290651 |
actgattatactgcaatgtcttctagctgtctgttatccctaacatgtct |
41290700 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 111 - 155
Target Start/End: Original strand, 35743234 - 35743278
Alignment:
| Q |
111 |
tataagtgttgatatacaagttatttctataacaagagatgaaat |
155 |
Q |
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| T |
35743234 |
tatatgtgttgatgtacaagttatttctataacaaaagataaaat |
35743278 |
T |
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