View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9853_low_12 (Length: 468)
Name: NF9853_low_12
Description: NF9853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9853_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 1 - 452
Target Start/End: Complemental strand, 49773135 - 49772688
Alignment:
| Q |
1 |
ggaatgtatgggttgaggacgaggattatatttatggttgatgtagaaaaagaaatcattttataattccaacaatcagagggtcatggaatcgggacga |
100 |
Q |
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| T |
49773135 |
ggaatgaatggggtgaggacgaggattatatttatggttgatgtagaaaaagaaatcattttattattccaacaatcagagggtcatggaatcgggacga |
49773036 |
T |
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| Q |
101 |
ggattgagaatatgatgatatatatgcatgtgatcaaagtatggcatggcacaggtttaaagtcttgtagtataaaaatttaatgattggctttgggtaa |
200 |
Q |
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| T |
49773035 |
ggattgagaatatgatgatat----gcatgtgatcaaagtatggcatggcacaggtttaaagtcttgtagtataaaaatttaatgattggctttgggtaa |
49772940 |
T |
|
| Q |
201 |
ctgccaacaattcaatatgaatatatcgttttcttttcagtttatatttcattcatacacttaaaatttaagcataaagctagctagagtttgtagggta |
300 |
Q |
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| T |
49772939 |
ctgccaacaattcaatatgaatatatcgttttcttttcagtttatatttcattcatacacttcaaatttaagcataaagctagctagagtttgtagggta |
49772840 |
T |
|
| Q |
301 |
acccatggtctcaacctattaacttgttgatttggttgttttnnnnnnnnnncaagttgttgatttggtgaatatatattgaaagagagagtgcagctat |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49772839 |
acccatggtctcaacctattaacttgttgatttggttgttttaaaaaaaaaacaagttgttgatttggtgaatatatattgaaagagagagtgcagctat |
49772740 |
T |
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| Q |
401 |
ttaatagtcgactggggccattcctttgtttatcatctcaaccccaatgact |
452 |
Q |
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| T |
49772739 |
ttaatagtcgactggggccattcctttgtttatcatctcaaccccaatgact |
49772688 |
T |
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