View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9853_low_13 (Length: 452)
Name: NF9853_low_13
Description: NF9853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9853_low_13 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 426; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 19 - 452
Target Start/End: Original strand, 7012966 - 7013399
Alignment:
| Q |
19 |
caccactccggagcaaacagcaccgccacctcttccaccagcagctaaagagttcttagaatcacacaacaaagcaagagctgaagtaggtgttgagcca |
118 |
Q |
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| T |
7012966 |
caccactccggagccaacagcaccgccacctcttacaccagcagctaaagagttcttagaatcacacaacaaagcaagagctgaagtaggtgttgagcca |
7013065 |
T |
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| Q |
119 |
cttcaatggagcgagaagctagcaaaagacacaagcttactagtccgttaccaaaggaacaaaatggcttgcgattttgcaaacttaacagctagcaagt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7013066 |
cttcaatggagcgagaagctagcaaaagacacaagcttactagtccgttaccaaaggaacaaaatggcttgcgattttgcaaacttaacagctagcaagt |
7013165 |
T |
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| Q |
219 |
acggcggtaaccagctttgggctggttccgccgcggctgttacaccaagcaaagcggtggaggagtgggtgaaggagaaagagttttacattcatgtgaa |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7013166 |
acggcggtaaccagctttgggctggttccgccgcggctgttacaccaagcaaagcggtggaggagtgggtgaaggagaaagagttttacattcatgtgaa |
7013265 |
T |
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| Q |
319 |
taatacttgtgtggtgaatcatgaatgtggtgtttatacacaggttgtgtggaagaaatcagcacaacttgggtgttcacaagctacttgtactggtaag |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7013266 |
taatacttgtgtggtgaatcatgaatgtggtgtttatacacaggttgtgtggaagaaatcagcacaacttgggtgttcacaagctacttgtactggtaag |
7013365 |
T |
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| Q |
419 |
aaggaagctagtttgactatttgtttctatgatc |
452 |
Q |
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| T |
7013366 |
aaggaagctagtttgactatttgtttctatgatc |
7013399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 36 - 452
Target Start/End: Original strand, 7006599 - 7007015
Alignment:
| Q |
36 |
cagcaccgccacctcttccaccagcagctaaagagttcttagaatcacacaacaaagcaagagctgaagtaggtgttgagccacttcaatggagcgagaa |
135 |
Q |
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||||||| ||| |||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||| |
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| T |
7006599 |
cagcaccaccatctcttccaccagcagccaaagagttcttagaatctcacaacaaagcatgagctgaagtaggtgttgagccacttcaatggagtgagaa |
7006698 |
T |
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| Q |
136 |
gctagcaaaagacacaagcttactagtccgttaccaaaggaacaaaatggcttgcgattttgcaaacttaacagctagcaagtacggcggtaaccagctt |
235 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| | | | || ||| |||||||||| || |||||||||||||||||| |
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| T |
7006699 |
tctagcaaaagacacaagcttactagtccgttaccaaaggaacaaaatggcttgtggtctcgccaacctaacagctagtaaatacggcggtaaccagctt |
7006798 |
T |
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| Q |
236 |
tgggctggttccgccgcggctgttacaccaagcaaagcggtggaggagtgggtgaaggagaaagagttttacattcatgtgaataatacttgtgtggtga |
335 |
Q |
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| T |
7006799 |
tgggtgagtattggggaggccataatgccgagctcagtagtgaagttgtgggtgaggaagaaagagctttacattcatgtgaatgatacttgt---gtga |
7006895 |
T |
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| Q |
336 |
atcatga---atgtggtgtttatacacaggttgtgtggaagaaatcagcacaacttgggtgttcacaagctacttgtactggtaagaaggaagctagttt |
432 |
Q |
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||||||| ||| || ||||| |||||||||||||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||| |||| |
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| T |
7006896 |
atcatgagttctgtcatgcttataggcaggttgtgtggaagaaatcagtacaacttgggtgttcacaggctacttgtactgataagaaggaagctggttt |
7006995 |
T |
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| Q |
433 |
gactatttgtttctatgatc |
452 |
Q |
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| T |
7006996 |
gactatttgtttctatgatc |
7007015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 36 - 177
Target Start/End: Complemental strand, 7695011 - 7694870
Alignment:
| Q |
36 |
cagcaccgccacctcttccaccagcagctaaagagttcttagaatcacacaacaaagcaagagctgaagtaggtgttgagccacttcaatggagcgagaa |
135 |
Q |
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||||||| ||||||||||||||| |||| ||| |||||||||||| ||||||||| |||||||||||||||||||| |||||| ||||| ||||||| |
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| T |
7695011 |
cagcaccaccacctcttccaccaccagccaaaaagttcttagaatagaacaacaaagatagagctgaagtaggtgttgacccactttaatggggcgagaa |
7694912 |
T |
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| Q |
136 |
gctagcaaaagacacaagcttactagtccgttaccaaaggaa |
177 |
Q |
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| T |
7694911 |
gctagcaaaagacacatgcttactagtcaattaccaaaggaa |
7694870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 278 - 371
Target Start/End: Complemental strand, 33556516 - 33556423
Alignment:
| Q |
278 |
gaggagtgggtgaaggagaaagagttttacattcat-gtgaataatacttgtgtggtgaatcatgaatgtggtgtttatacacaggttgtgtgga |
371 |
Q |
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||||| |||||||||||||| |||||||| | |||| |||| |||||| ||||| ||||||||| |||||||||||||| || ||||| |||| |
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| T |
33556516 |
gaggaatgggtgaaggagaaggagttttataatcatagtga-taatacatgtgttgtgaatcataggtgtggtgtttatactcaagttgtttgga |
33556423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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