View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9853_low_14 (Length: 445)
Name: NF9853_low_14
Description: NF9853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9853_low_14 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 383; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 15 - 426
Target Start/End: Original strand, 40093199 - 40093610
Alignment:
| Q |
15 |
tggacatcaggttcagcttttcttgtttttagtttccaattatgcatagaattgcttgctcccccaatgatttctctcattactatatctaacatgaacc |
114 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40093199 |
tggacttcaggttcagcttttcttgtttttagtttccaattatgcatagaattgcttgctcccccaatgatttctctcattactatatctaacatgaacc |
40093298 |
T |
|
| Q |
115 |
atatacacatcagaactatggagcnnnnnnngacacatggggagcggggatcaccggtccagtgatattgaaaggtttgaagaatggcaacaagactctt |
214 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40093299 |
atatacacatcagaactatggagctttttttgacacatggggagcggggatcaccggtccagtgatattgaaaggtttgaagaatggcaacaagactctt |
40093398 |
T |
|
| Q |
215 |
gatctctcctctcggaagtggacatatcaggtcagtcttcacttttgatcgaagactatttattagtcttacatagttaatggagttaattcttttgata |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40093399 |
gatctctcctctcggaagtggacatatcaggtcagtcttcacttttgatcgaagactatttgttagtcttacatagttaatggagttaattcttttgata |
40093498 |
T |
|
| Q |
315 |
caggttggcctaaaaggtgaagatttaggtctctctagtggaagttccggagcgtggaattcaaagactactttccctaagaaacaaccattgatttggt |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40093499 |
caggttggcctaaaaggtgaagatttaggtctctctagtggaagttccggagcgtggaattcaaagactactttccctaagaaacaaccattgatttggt |
40093598 |
T |
|
| Q |
415 |
acaaggtaattt |
426 |
Q |
| |
|
|||||||||||| |
|
|
| T |
40093599 |
acaaggtaattt |
40093610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 15 - 427
Target Start/End: Original strand, 40062542 - 40062980
Alignment:
| Q |
15 |
tggacatcaggttcagcttttcttgtttttagtttccaattatgcatagaattgcttgctcccccaatgatttctctcattactatatctaa-----cat |
109 |
Q |
| |
|
||||| |||||||||| ||||| ||||| ||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||||| ||| |
|
|
| T |
40062542 |
tggacttcaggttcagattttcgtgtttgtagtttccaattatgcatagaatggcttgctcctccaaagatttctctcattactatatctaagctaacat |
40062641 |
T |
|
| Q |
110 |
gaaccatatacacatcagaactatggagcnnnnnnngacacatggggagcggggatcaccggtccagtgatattgaaaggtttgaagaatggcaacaaga |
209 |
Q |
| |
|
||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| | |
|
|
| T |
40062642 |
gaaccatatgcacatcagaactatggagctttttttgacagatggggagcggggatcaccggtccagtaacattgaaaggtttgaagaatggcaacaaca |
40062741 |
T |
|
| Q |
210 |
ctcttgatctctcctctcggaagtggacatatcaggtcagtcttcactt------------ttgatcgaagactatttattagtctta---------cat |
288 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||| |||| |||||| |||||||||||||||||||| || |
|
|
| T |
40062742 |
ctcttgatctctcctctcagaagtggacatatcaggtcagtcttaacttttgatcaaagacttgatcaaagactatttattagtcttaatggagattgat |
40062841 |
T |
|
| Q |
289 |
agttaatggagttaattcttttgatacaggttggcctaaaaggtgaagatttaggtctctctagtggaagttccggagcgtggaattcaaagactacttt |
388 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||| || ||||| ||| || ||||||| |
|
|
| T |
40062842 |
tgttaatggagttaattctattgatacaggttggcctaaaaggtgaagatttaggtctgtccagtggaagttccgaaggttggaactcacagtctacttt |
40062941 |
T |
|
| Q |
389 |
ccctaagaaacaaccattgatttggtacaaggtaatttt |
427 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
40062942 |
ccctaagaatcaaccattgatttggtacaaggtaatttt |
40062980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 57 - 427
Target Start/End: Original strand, 40080933 - 40081330
Alignment:
| Q |
57 |
tgcatagaattgcttgctcccccaatgatttctctcattactatatctaac-----atgaaccatatacacatcagaactatggagcnnnnnnngacaca |
151 |
Q |
| |
|
|||||||| | ||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
40080933 |
tgcatagactggcttgctccttcagtgatttctctcattactatatctaagctaatatgaaccatatacacatcagaactatggagccttttttgacaca |
40081032 |
T |
|
| Q |
152 |
tggggagcggggatcaccggtccagtgatattgaaaggtttgaagaatggcaacaagactcttgatctctcctctcggaagtggacatatcaggtcagtc |
251 |
Q |
| |
|
|||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
40081033 |
gtgggagcagggatcaccggtcccgtgatattgaaaggtttgaagaatggcaacaacactcttgatctctcctctcggaagtggacatatcaggtcaatc |
40081132 |
T |
|
| Q |
252 |
tt-cacttttgatcgaagactatttattagtct---------------------tacatagttaatggagttaattcttttgatacaggttggcctaaaa |
329 |
Q |
| |
|
|| | ||||||||||| ||||||||||| ||| ||||| |||||||||||||||| ||| ||||||| ||||||||||| |
|
|
| T |
40081133 |
ttaaatttttgatcgaaaactatttattattctttctttatcactttaatggaatacattgttaatggagttaattttttcgatacagattggcctaaaa |
40081232 |
T |
|
| Q |
330 |
ggtgaagatttaggtctctctagtggaagttccggagcgtggaattcaaagactactttccctaagaaacaaccattgatttggtacaaggtaatttt |
427 |
Q |
| |
|
|| |||||||||||||| |||||||||||||| |||| |||||||||| || |||||| ||||||||| ||||||||| |||||||||||||| |||| |
|
|
| T |
40081233 |
ggcgaagatttaggtctgtctagtggaagttctggagggtggaattcacagtctacttaccctaagaaccaaccattggtttggtacaaggtagtttt |
40081330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 61
Target Start/End: Original strand, 40080866 - 40080912
Alignment:
| Q |
15 |
tggacatcaggttcagcttttcttgtttttagtttccaattatgcat |
61 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
40080866 |
tggacttcaggttcagcttttcttgtttttagtttctaaatatgcat |
40080912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University