View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9853_low_15 (Length: 435)
Name: NF9853_low_15
Description: NF9853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9853_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 339; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 83 - 425
Target Start/End: Complemental strand, 32131509 - 32131167
Alignment:
| Q |
83 |
cagagaaatattaacaggttctagttttcatgaggaattccgtcaggattgatttattgatttgattctttcttggtaagtgatttagatgaatattcat |
182 |
Q |
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| T |
32131509 |
cagagaaatattaacaggttctagttttcatgaggaattccgtcaggattgatttattgatttgattctttcttggtaagtgatttagatgaatattcat |
32131410 |
T |
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| Q |
183 |
tactaactataaacttgccacattatcaactgactataaactttctccatttctacctataaacttgctgtgtcgttaaaccaacactcctctaagcatc |
282 |
Q |
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| T |
32131409 |
tactaactataaacttgccacattatcaactgactataaactttctccatttctacctataaacttgctgtgtcgttaaaccaacactcctctaagcatc |
32131310 |
T |
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| Q |
283 |
tcatcacacttgccacattatcaattaactctcatccacctcaacacatttcttcctttcagtttagactttcatacaaactagcttatttgagctccca |
382 |
Q |
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| T |
32131309 |
tcatcacacttgccacattatcaattaactcttatccacctcaacacatttcttcctttcagtttagactttcatacaaactagcttatttgagctccca |
32131210 |
T |
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| Q |
383 |
acctaaacctgatcaactcctcattggggttggaggacctatg |
425 |
Q |
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| T |
32131209 |
acctaaacctgatcaactcctcattggggttggaggacctatg |
32131167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 32131563 - 32131530
Alignment:
| Q |
19 |
cttccaagtaacctcatcccatggcattgccctt |
52 |
Q |
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| T |
32131563 |
cttccaagtaacctcatcccatggcattgccctt |
32131530 |
T |
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