View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9853_low_16 (Length: 430)
Name: NF9853_low_16
Description: NF9853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9853_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 375; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 5 - 407
Target Start/End: Complemental strand, 30403605 - 30403203
Alignment:
| Q |
5 |
caattcagtacatatctcccagataactcttgtatgttatctaacagaagaaaaaatacatgcaaaaacataatcttaacaaaggtagaaatcattatct |
104 |
Q |
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| T |
30403605 |
caattcagtacatatctcccagataactcttgtatgttatctaacagaagaaaaaatacatgcaaaaacataatcttaacaaaggtagaaatcattatct |
30403506 |
T |
|
| Q |
105 |
cttatttgatcgaaaaacagtgaatattaataagagcaaatttcagttttttctaaattttcagattgtattttccgaattgtatatggaactaggtgag |
204 |
Q |
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| T |
30403505 |
cttatttgatcgaaaaatagtgaatattaataagagcaaatttcagttttttctaaattttcggattgtattttccgaattgtatatggaactaggtgag |
30403406 |
T |
|
| Q |
205 |
gcctagaaatgtctaattgttctcacagaccttatgctcctaatggggtgaaccatgattaatttttctaccggtgcaatccaccttgtgcacattttgt |
304 |
Q |
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| T |
30403405 |
gcctagaaatgttcaattgttctcacagaccttatgctcctaatggggtgaaccatgattaatttttctaccggtgcaaaccaccttgtgcacattttgt |
30403306 |
T |
|
| Q |
305 |
tactaaggactatggtcacatggatatggtagattatgagacacatgacatgattttagacgtagtctattggaagtgcatgtgtaagaatgtgactgat |
404 |
Q |
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| T |
30403305 |
tactaaggactatggtcacatggatatggtagattatgagacacatgacatgattttagacgtagtatatttgaagtgcatgtgtaagaatgtgactgat |
30403206 |
T |
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| Q |
405 |
tct |
407 |
Q |
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| T |
30403205 |
tct |
30403203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 233 - 352
Target Start/End: Original strand, 30842027 - 30842146
Alignment:
| Q |
233 |
accttatgctcctaatggggtgaaccatgattaatttttctaccggtgcaatccaccttgtgcacattttgttactaaggactatggtcacatggatatg |
332 |
Q |
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| T |
30842027 |
accttgtgctcctgatggggtgaaccatgaggaatttttctatgaatgtaaaccaccttgtgcacattttgttgttaaggattatggtcacatggatatg |
30842126 |
T |
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| Q |
333 |
gtagattatgagacacatga |
352 |
Q |
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| T |
30842127 |
ttagatgatgagacacatga |
30842146 |
T |
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